Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20itinerans_20[genbank_20GCA_5F001649415.1_202016-05-21] 28,415 sequences; 455,349,267 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq1710 109 5e-19 seq1066 105 6e-18 seq299 104 2e-17 seq193 96.9 3e-15 seq388 86.0 5e-12 >seq1710 Length=60682 Score = 109 bits (120), Expect = 5e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 ||||| || || ||||| ||||||||| || |||| ||||||||||||| ||||| Sbjct 22908 GTAGACTCCTTCTGAATGTTGTAGTCGGCCAACGTGCGGCCGTCTTCGAGCTGCTTACCA 22849 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||| | ||| || ||||| || | ||||| || || ||| ||| || Sbjct 22848 GCGAAGATGAGCCTCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATTTTGGCCTTA 22789 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | | ||| || || || || || | ||||| || ||||| Sbjct 22788 ACGTTGTCGATCGTGTCCGAGCTTTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGAGTC 22729 Query 27231 TTCACAAAGATTTGCATA 27248 ||||||||||| |||||| Sbjct 22728 TTCACAAAGATCTGCATA 22711 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || ||||| ||||||||| || | |||| ||||||||||||| ||||| Sbjct 22680 GTGGACTCCTTCTGAATGTTGTAGTCGGCCAAGGTGCGGCCGTCTTCGAGCTGCTTACCA 22621 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||| | ||| || || || || | ||||| || || ||||||| || Sbjct 22620 GCGAAGATGAGCCTCTGCTGGTCGGGGGGGATCCCCTCCTTGTCTTGGATCTTGGCCTTG 22561 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | ||||| | || ||| || ||||| || || | ||||| || || ||| Sbjct 22560 ACATTGTCGATGGTGTCGGAGGATTCCACCTCTAGGGTGATGGTCTTGCCAGTGAGGGTT 22501 Query 27231 TTCACAAAGATTTGCAT 27247 ||||| ||||| ||||| Sbjct 22500 TTCACGAAGATCTGCAT 22484 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 |||| ||| | || || || || ||||| || |||||| || | |||| | || ||| Sbjct 23148 ACCAGATGAAGGGTGGACTCCTTCTGAATGTTATAGTCGGCCAAGGTGCGGCCATCCTCG 23089 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| || |||||| | || || | ||| || ||||| || | ||||| || || | Sbjct 23088 AGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGG 23029 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 || ||| || | | | || | ||||| | | || || || || || || | ||| Sbjct 23028 ATTTTGGCCTTAACGTTGTCGATCGTGTCCGAGCTCTCGACCTCGAGGGTGATGGTCTTG 22969 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || ||||| ||||||||||| |||||| Sbjct 22968 CCGGTGAGAGTCTTCACAAAGATCTGCATA 22939 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 |||| ||| | || || || || ||||| || |||||| || | |||| | || ||| Sbjct 24869 ACCAGATGAAGGGTGGACTCCTTCTGAATGTTATAGTCGGCCAAGGTGCGGCCATCCTCG 24928 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| || |||||| | || || | ||| || ||||| || | ||||| || || | Sbjct 24929 AGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGG 24988 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 || ||| || | | | || | ||||| | | || || || || || || | ||| Sbjct 24989 ATTTTGGCCTTGACGTTGTCGATCGTGTCCGAGCTCTCGACCTCGAGGGTGATGGTCTTG 25048 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || ||||| ||||||||||| |||||| Sbjct 25049 CCGGTGAGAGTCTTCACAAAGATCTGCATA 25078 >seq1066 Length=105919 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 27050 CGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 ||| || || || || || ||||||||| | | | || | || |||||||| || || Sbjct 79642 CGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTTCGGCCATCCTCGAGCTGCTTTCC 79583 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 |||| | ||||||||||| ||||||||||| | ||||| || || |||||| || Sbjct 79582 GGCGAAGATGAGACGCTGCTGATCCGGCGGGATGCCCTCCTTGTCCTGAATCTTGGCCTT 79523 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 || | | || | ||||| | | ||| || || || || || | || |||||||| || Sbjct 79522 CACGTTGTCAATCGTGTCCGACGATTCCACCTCGAGGGTGATCGTCTTCCCCGTCAGCGT 79463 Query 27230 TTTCACAAAGATTTGCAT 27247 ||||| ||||| ||||| Sbjct 79462 CTTCACGAAGATCTGCAT 79445 >seq299 Length=319228 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || |||||||||||| || | |||| | || ||||||||||| || Sbjct 261003 GTGGACTCCTTCTGGATATTGTAGTCGGCCAAGGTGCGGCCATCCTCGAGCTGTTTGCCA 260944 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||| | || |||||||| || | || || || || ||||||| || Sbjct 260943 GCGAAGATGAGCCTTTGCTGATCCGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTG 260884 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | ||||| | || |||||| || || || || | || || || |||||| Sbjct 260883 ACATTGTCAATGGTGTCAGAGGATTCAACCTCAAGGGTGATGGTCTTTCCGGTGAGAGTT 260824 Query 27231 TTCACAAAGATTTGCAT 27247 || |||||||||||||| Sbjct 260823 TTGACAAAGATTTGCAT 260807 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || |||||||||||| || | |||| | || ||||||||||| || Sbjct 261231 GTGGACTCCTTCTGGATATTGTAGTCGGCCAAGGTGCGGCCATCCTCGAGCTGTTTGCCA 261172 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||| | || |||||||| || | || || || || ||||||| || Sbjct 261171 GCGAAGATGAGCCTTTGCTGATCCGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTG 261112 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | |||||| | || |||||| || || || || | || || || |||||| Sbjct 261111 ACATTGTCGATAGTGTCAGAGGATTCAACCTCAAGGGTGATGGTCTTTCCGGTGAGAGTT 261052 Query 27231 TTCACAAAGATTTGCAT 27247 || ||||| || ||||| Sbjct 261051 TTGACAAAAATCTGCAT 261035 >seq193 Length=408959 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27020 GCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCT 27079 ||| ||||| | || | |||| || | || || || || || || |||||||| Sbjct 265570 GCCGCCGCGGAGGCGGAGCACCAGGTGGAGGGTGGATTCCTTCTGTATGTTGTAGTCCGC 265511 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 || | ||||| |||| |||||||| || |||||| | ||||| | ||| ||||||||||| Sbjct 265510 CAGGGTGCGCCCGTCCTCGAGCTGCTTCCCGGCGAAGATGAGCCTCTGCTGATCCGGCGG 265451 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | ||||| || || |||||| || | | | || | ||||| | | || || Sbjct 265450 GATGCCCTCCTTGTCCTGGATCTTAGCCTTGACGTTGTCGATGGTGTCCGAGCTCTCCAC 265391 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || | || || || |||||||| ||||| || ||||| Sbjct 265390 CTCCAGTGTGATCGTCTTCCCGGTGAGAGTTTTGACAAATATCTGCAT 265343 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| | | || || |||| ||| | ||| || || || || || ||||| ||| Sbjct 265113 CCTCCCCTGAGCCTCAGCACCAGATGGAGCGTGGACTCCTTCTGGATGTTGTAATCGGCA 265054 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | |||| |||||||||||||||| || || | ||||| | || || |||||||| Sbjct 265053 AGAGTGCGGCCGTCTTCGAGCTGTTTGCCTGCAAAGATGAGCCTTTGCTGGTCCGGCGGG 264994 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||| || || ||||||| || | | | || | ||||| | | || || Sbjct 264993 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAGCTCTCGACC 264934 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || | || |||| || || || ||||| ||||| ||||| ||||| Sbjct 264933 TCCAAGGTAATAGTCTTCCCAGTGAGAGTCTTCACGAAGATCTGCAT 264887 >seq388 Length=261907 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 ||||| || || || || ||||||||| || |||| | || |||||||| || ||| Sbjct 215732 GTAGACTCCTTCTGGATGTTGTAGTCGGCCAAAGTGCGTCCATCCTCGAGCTGCTTGCCG 215673 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || ||||||| | || ||||||||||| | ||||| || || |||||| ||| Sbjct 215672 GCAAAAATGAGCCTTTGCTGATCCGGCGGGATTCCCTCCTTGTCCTGTATCTTGGCCTTC 215613 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | || || | | || || || | ||| |||| || ||||| || || Sbjct 215612 ACGTTGTCGATGGTATCCGAGCTCTCCACCTCCAAAGTGATAGTCTTCCCCGTGAGCGTC 215553 Query 27231 TTCACAAAGATTTGCAT 27247 || || ||||| ||||| Sbjct 215552 TTGACGAAGATCTGCAT 215536 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 ||||| || || || || ||||||||| || |||| | || |||||||| || ||| Sbjct 215960 GTAGACTCCTTCTGGATGTTGTAGTCGGCCAAAGTGCGTCCATCCTCGAGCTGCTTGCCG 215901 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || ||||||| | || ||||||||||| | ||||| || || |||||| ||| Sbjct 215900 GCAAAAATGAGCCTTTGCTGATCCGGCGGGATTCCCTCCTTGTCCTGTATCTTGGCCTTC 215841 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | || || | | || || || | ||| |||| || ||||| || || Sbjct 215840 ACGTTGTCGATGGTATCCGAGCTCTCCACCTCCAAAGTGATAGTCTTCCCCGTGAGCGTC 215781 Query 27231 TTCACAAAGATTTGCAT 27247 || || ||||| ||||| Sbjct 215780 TTGACGAAGATCTGCAT 215764 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||||||| || |||| | || |||||||| || ||| Sbjct 216416 GTGGACTCCTTCTGGATGTTGTAGTCGGCCAAAGTGCGTCCATCCTCGAGCTGCTTGCCG 216357 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || ||||||| | || ||||||||||| | ||||| || || |||||| ||| Sbjct 216356 GCAAAAATGAGCCTTTGCTGATCCGGCGGGATTCCCTCCTTGTCCTGTATCTTGGCCTTC 216297 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | || || | | || || || ||||| |||| || ||||| || || Sbjct 216296 ACGTTGTCGATGGTATCCGAGCTCTCCACCTCCAGAGTGATAGTCTTCCCCGTGAGCGTC 216237 Query 27231 TTCACAAAGATTTGCAT 27247 || || ||||| ||||| Sbjct 216236 TTGACGAAGATCTGCAT 216220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424787241897480