Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20itinerans_20[genbank_20GCA_5F001649415.1_202016-05-21] 28,415 sequences; 455,349,267 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq1439 93.3 1e-13 seq202 87.8 6e-12 seq83 86.0 2e-11 >seq1439 Length=74689 Score = 93.3 bits (102), Expect = 1e-13 Identities = 125/173 (72%), Gaps = 1/173 (1%) Strand=Plus/Minus Query 443700 TTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTTT 443759 |||| |||||| || || || || || ||||| || | || || |||| ||| Sbjct 62654 TTCGCCGAGCGCCTCGTTGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCCGGCTCCTTC 62595 Query 443760 AGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGA 443819 || ||||||||||| | || ||||| || || |||| ||||| |||||| ||||| Sbjct 62594 TGCG-CCATCTTCTGGCTCAAGAAGCGAGGCCTCATGCCGGGTCTCACCTTTTCAAACGA 62536 Query 443820 ACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTACA 443872 || ||| || |||||||| | || |||||||||||||| || ||||||| Sbjct 62535 GCTCATCTCCCGTGACGAGGGCCTCCACTGCGACTTCGCCTGCCTCCTCTACA 62483 >seq202 Length=395113 Score = 87.8 bits (96), Expect = 6e-12 Identities = 124/173 (72%), Gaps = 1/173 (1%) Strand=Plus/Minus Query 443699 CTTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTT 443758 ||||| ||||||||| ||||| || || ||||| || | || || |||| ||| Sbjct 244205 CTTCGCCGAGCGACTCGTCGCCTTCGCCTGCGTCGAGGGCATCTTTTTCTCCGGCTCCTT 244146 Query 443759 TAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACG 443818 || ||||||||||| | || ||||| || || |||| |||||| ||||| |||| Sbjct 244145 CTGCG-CCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTCACCTTCTCCAACG 244087 Query 443819 AACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTAC 443871 | || ||| || |||||||| | || |||||||| || || || || ||| Sbjct 244086 AGCTCATCTCCCGTGACGAGGGCCTTCACTGCGACTTTGCTTGCCTCCTTTAC 244034 >seq83 Length=609517 Score = 86.0 bits (94), Expect = 2e-11 Identities = 124/174 (71%), Gaps = 1/174 (1%) Strand=Plus/Plus Query 443699 CTTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTT 443758 ||||| |||||| || || || || || ||||| || | || || |||| ||| Sbjct 416516 CTTCGCCGAGCGCCTCGTTGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCCGGCTCCTT 416575 Query 443759 TAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACG 443818 || | ||||||||| | || || || || || |||| ||| || ||||| |||| Sbjct 416576 CTGCG-CTATCTTCTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTCACCTTCTCCAACG 416634 Query 443819 AACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTACA 443872 |||| ||| || |||||||| | || |||||||||||||| || ||||||| Sbjct 416635 AACTCATCTCCCGCGACGAGGGCCTCCACTGCGACTTCGCCTGCCTCCTCTACA 416688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1587757738979675