Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20itinerans_20[genbank_20GCA_5F001649415.1_202016-05-21] 28,415 sequences; 455,349,267 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq83 136 5e-27 seq1439 129 7e-25 seq215 127 3e-24 seq2275 123 3e-23 seq202 123 3e-23 seq125 120 4e-22 seq308 89.7 6e-13 seq88 84.2 3e-11 >seq83 Length=609517 Score = 136 bits (150), Expect = 5e-27 Identities = 239/343 (70%), Gaps = 4/343 (1%) Strand=Plus/Minus Query 122481 GAGGAGACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGAT 122540 ||| || || || | ||| |||| ||||||| | ||| ||| |||||| |||| Sbjct 416852 GAGCAGGCGGTCGGCCACGAACTCGATGTACTGGCTCATGAGATCAACGTTCATCCCGAC 416793 Query 122541 GAG-GTTACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCA 122599 ||| | ||| ||||||||||| ||| |||| | || || ||||| || || | Sbjct 416792 GAGAGCGACA-GGGAGTGCGTCGCAGACGAACTCCCGTTCGATGTCAACAGCGTCCGCAA 416734 Query 122600 CGATGGCGTGGATAGTTTCGGTAGTGGGTCTATTACGCAA-AGTCTTGAAGAGCTCCACG 122658 |||| || ||| | ||| | | | || || | || || | |||| | Sbjct 416733 CGATTGCCCGGACCGCTTCCTCGGACAGCTTGTTGCGGAGGAGGCT-GTAGAGGAGGCAG 416675 Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 || || || |||||| ||||| || ||||| || ||||| || |||||| || || Sbjct 416674 GCGAAGTCGCAGTGGAGGCCCTCGTCGCGGGAGATGAGTTCGTTGGAGAAGGTGAGGCCG 416615 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778 |||||||| || || ||||| | ||| | ||||||||||| || |||||||||||||| Sbjct 416614 GGCATGAGGCCGCGTTTCTTGAGCCAGAAGATAGCGCAGAAGGAGCCGGAGAAGAAGATG 416555 Query 122779 CCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGC 122821 ||||| || || || || |||| ||||| ||||||||||||| Sbjct 416554 CCCTCGACGCAGGCGAAGGCAACGAGGCGCTCGGCGAAGGAGC 416512 >seq1439 Length=74689 Score = 129 bits (142), Expect = 7e-25 Identities = 119/151 (79%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 |||||| ||||| || ||||| || || || ||||| ||| ||||| |||||||| || Sbjct 62508 GTGGAGGCCCTCGTCACGGGAGATGAGCTCGTTTGAAAAGGTGAGACCCGGCATGAGGCC 62567 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 |||||||| | ||| | || |||||||| || |||||||||||||| ||||| || || Sbjct 62568 TCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCGGAGAAGAAGATGCCCTCGACGCA 62627 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGGAG 122820 || || |||| ||||| |||||||| ||| Sbjct 62628 GGCGAAGGCAACGAGGCGCTCGGCGAATGAG 62658 >seq215 Length=379446 Score = 127 bits (140), Expect = 3e-24 Identities = 250/365 (68%), Gaps = 6/365 (2%) Strand=Plus/Minus Query 11453 TCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGCA 11512 ||||| ||||| || ||||| | || ||| || || || |||| || || || ||| Sbjct 310873 TCAAATCGACCAGGCCGAAGTAAAGCAGAATCTAGAATGTCTGCGCGGTTGGTCGCTGCA 310814 Query 11513 ATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTAATT 11572 || || | || ||||| | |||||||||||||| || || | | ||||| | Sbjct 310813 ATGACAATTATACCAGTATTTCCTTCAAAGCCATCCATTTCAGTCAAAAGCTGATTGAGA 310754 Query 11573 GTTTGTTCTCTCTCATCATTTGCTGGCATACCA--CCAGCACTGCGTTGCTTGCCCACCG 11630 || |||||||| ||||||||| || | | | | || | | | |||| | || || | Sbjct 310753 GTCTGTTCTCTTTCATCATTTCCT--CCTCCAATTCCTGTTCCTCTTTGCCTACCAACGG 310696 Query 11631 CATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGAT 11690 |||| |||||||||| || |||||||| || ||| || ||| | | || || | Sbjct 310695 CATCGATCTCATCAACAAACACAATACAAGGAGCATTCTCTTTGGCCTTCTTGAAAAGGT 310636 Query 11691 CGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCACT 11750 | ||||| | | ||||| |||||||||||||| || ||||| | | | || | | Sbjct 310635 CACGAACTCGTGAAGCACCGACACCAACAAACATTTCTACAAATTCAGATCCTGA-AATT 310577 Query 11751 G-GATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTA 11809 | || ||||||||| || |||||| || || || ||| || | |||||||| || Sbjct 310576 GAGAAAAATGGGACACCTGCTTCACCAGCAATTGCCTTGGCAAGCAAAGTCTTTCCAGTT 310517 Query 11810 CCTGG 11814 ||||| Sbjct 310516 CCTGG 310512 >seq2275 Length=40372 Score = 123 bits (136), Expect = 3e-23 Identities = 275/407 (68%), Gaps = 12/407 (3%) Strand=Plus/Plus Query 11453 TCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGCA 11512 ||||| || || || ||||| | || ||| || || || |||| || || || || Sbjct 23142 TCAAATCGCCCAGGCCGAAGCAAAGCAGAATCTAGAATGTCTGCGCGGTTGGTTGCTGCG 23201 Query 11513 ATAACCACAATGCCAGTCTCATTG---TCAAAGCCATCCATCTCGGTGAGTAATTGATTA 11569 || || | || || || |||| |||||||||||||||||||| | | |||||| Sbjct 23202 ATCACAATTATACCTGT---ATTGCCTTCAAAGCCATCCATCTCGGTCAAAAGCTGATTA 23258 Query 11570 ATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCA--CCAGCACTGCGTTGCTTGCCCA 11627 | || ||||| || ||||||||| || | | | | || | | | |||| | || | Sbjct 23259 AGAGTCTGTTCCCTTTCATCATTTCCT--CCTCCGATTCCTGTTCCTCTTTGCCTTCCAA 23316 Query 11628 CCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGA 11687 | |||||||||||||||| || ||||| || || ||| || ||| | | || | Sbjct 23317 CAGCATCAATCTCATCAACAAACACAATGCAAGGAGCATTCTCTTTGGCCTTCTTGAAAA 23376 Query 11688 GATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAGC 11747 |||| ||||| | ||||| |||||||||||||| || ||||| | | | || Sbjct 23377 GATCACGAACTCGAGAAGCACCAACACCAACAAACATTTCTACAAATTCAGATCCTGA-A 23435 Query 11748 ACTG-GATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCC 11806 | || || ||||||||| || ||||| || || || || || | |||||| || Sbjct 23436 ATTGAGAAAAATGGGACACCTGCCTCACCAGCAATTGCCTTAGCAAGCAAGGTCTTCCCA 23495 Query 11807 GTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACC 11853 || ||||| ||| | |||||| | ||| ||||| |||||| Sbjct 23496 GTTCCTGGAGGACCAACAAGAAGGACACCTTTAGGGATACGGGCACC 23542 >seq202 Length=395113 Score = 123 bits (136), Expect = 3e-23 Identities = 150/204 (74%), Gaps = 3/204 (1%) Strand=Plus/Plus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 ||||| || ||| || ||||| || ||||| || || || || |||||| ||||| Sbjct 244047 GCAAAGTCGCAGTGAAGGCCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTGAGACCG 244106 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778 |||||||| || |||||||| | ||| | || |||||||| || |||||||| ||||| Sbjct 244107 GGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCGGAGAAAAAGATG 244166 Query 122779 CCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAAC 122838 ||||| || || || || || | || || ||||||||||||| ||| | |||| | Sbjct 244167 CCCTCGACGCAGGCGAAGGCGACGAGTCGCTCGGCGAAGGAGCCAGA---AGACTCAATC 244223 Query 122839 CATTTCATTGCCCATTTCGCCTTC 122862 |||| | ||||| | |||||| Sbjct 244224 CATTGGAGGGCCCAGTCGGCCTTC 244247 >seq125 Length=520858 Score = 120 bits (132), Expect = 4e-22 Identities = 117/151 (77%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 122671 TGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCC 122730 || || ||||| || ||||| ||||| || || |||||| || || |||||||| || Sbjct 302553 TGAAGGCCCTCGTCACGGGAGATAAGCTCGTTCGAGAAGGTGAGCCCCGGCATGAGGCCG 302612 Query 122731 CGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACAC 122790 |||||||| | |||| | ||||||||||| || || ||||||||||| ||||| ||||| Sbjct 302613 CGCTTCTTGAGCCAAAAGATAGCGCAGAAGGAGCCAGAGAAGAAGATTCCCTCGACACAG 302672 Query 122791 GCAAACGCAAAAAGGCGTTCGGCGAAGGAGC 122821 || || || | || || ||||| || |||| Sbjct 302673 GCGAAGGCGACAATTCGCTCGGCAAACGAGC 302703 >seq308 Length=314964 Score = 89.7 bits (98), Expect = 6e-13 Identities = 196/291 (67%), Gaps = 2/291 (1%) Strand=Plus/Plus Query 11540 AAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTG-G 11598 || ||||||||||| || | | ||||| || || || || ||||||||||| | | Sbjct 202545 AACCCATCCATCTCCGTCAAGAGCTGATTGATAGTCTGCTCCCTCTCATCATTGCCACCG 202604 Query 11599 CATACCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACA 11658 | | | ||||| | | ||| | |||||||||||||| ||||| ||||| ||||| || Sbjct 202605 CCAAGC-CCAGCTCCTCTCTGCCTTCCCACCGCATCAATTTCATCGATGAAAACAATGCA 202663 Query 11659 TGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAAC 11718 ||| || | || | ||||| ||||| || ||||| || ||||| || || Sbjct 202664 CGGTGCCTTAGCCTTTGCCTTCTCAAACAGATCCCGGACCCTCGACGCCCCCACTCCCAC 202723 Query 11719 AAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCGC 11778 ||| | |||||| || | | || | ||| || ||| ||||| | || || || Sbjct 202724 AAATAGCTCCACGAACTCGGACGCTGCACACGAGAAGAACGGGACTCCGGCCTCTCCTGC 202783 Query 11779 GATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAG 11829 | || | || || || ||||| || ||||| ||| |||| | | ||| Sbjct 202784 CACCGCCCTCGCCAGCAGCGTCTTGCCGGTACCCGGCGGACCCACCAAAAG 202834 >seq88 Length=602216 Score = 84.2 bits (92), Expect = 3e-11 Identities = 160/233 (69%), Gaps = 12/233 (5%) Strand=Plus/Minus Query 11501 TTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGT 11560 ||||| || ||||| || | || ||| | ||| ||| |||||||| || |||||| Sbjct 290453 TTAGTAGCAGCAATTACAATAACTCCACTATCACCACTAAAACCATCCATTTCAGTGAGT 290394 Query 11561 AATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCA--CCAGCACTGCGTT 11618 | ||||| | ||| |||||||| ||||||||| || | | | | || | | | | Sbjct 290393 AGCTGATTCAGTGTCTGTTCTCTTTCATCATTTCCT--CCTCCAATTCCTGTTCCCCTCT 290336 Query 11619 GCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATG----GTTGATTTTCGCGG 11674 || | || || ||||||||||||||||| || || | |||| ||| || || Sbjct 290335 GCCTTCCTACTGCATCAATCTCATCAATAAATACCAGGCATGGAGAGTTCATCTT----T 290280 Query 11675 GCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTC 11727 || | | ||| ||||| || || || || ||||| || ||||||||||| Sbjct 290279 GCCTTGTTAAACAGATCCCGCACTCTCGAAGCCCCCACTCCGACAAACATCTC 290227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627808930884000