Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20itinerans_20[genbank_20GCA_5F001649415.1_202016-05-21] 28,415 sequences; 455,349,267 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq83 150 2e-31 seq1439 141 1e-28 seq202 141 1e-28 seq125 136 5e-27 seq215 105 8e-18 seq1456 91.5 2e-13 seq308 87.8 2e-12 >seq83 Length=609517 Score = 150 bits (166), Expect = 2e-31 Identities = 247/348 (71%), Gaps = 6/348 (2%) Strand=Plus/Minus Query 129838 GAGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGAT 129897 ||| || || || | ||| |||| ||||||| ||| || |||||| |||| Sbjct 416852 GAGCAGGCGGTCGGCCACGAACTCGATGTACTGGCTCATGAGATCAACGTTCATCCCGAC 416793 Query 129898 GAG-GTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCA 129956 ||| | ||| ||||| ||||| ||| |||| || || ||||| ||||| ||| | Sbjct 416792 GAGAGCGACA-GGGAGTGCGTCGCAGACGAACTCCCGTTCGATGTCAACAGCGTCCGCAA 416734 Query 129957 CGATGGCGTGAATGGTCTCCGTGC-CAGGTCTATTGCGCAA-AGTCTTGAAGAGTTCCAC 130014 |||| || | | | ||| | ||| | | ||||| | || || | |||| Sbjct 416733 CGATTGCCCGGACCGCTTCCTCGGACAGCT-TGTTGCGGAGGAGGCT-GTAGAGGAGGCA 416676 Query 130015 GGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 130074 ||| || || |||||| |||||||| |||||||||||||| || |||||| || || Sbjct 416675 GGCGAAGTCGCAGTGGAGGCCCTCGTCGCGGGAGATGAGTTCGTTGGAGAAGGTGAGGCC 416616 Query 130075 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 130134 |||||||| || || ||||| | |||||| || || || || ||||| ||||||||||| Sbjct 416615 GGGCATGAGGCCGCGTTTCTTGAGCCAGAAGATAGCGCAGAAGGAGCCGGAGAAGAAGAT 416556 Query 130135 CCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGA 130182 ||||| || || ||||| |||| ||| ||||| || ||||||| ||| Sbjct 416555 GCCCTCGACGCAGGCGAAGGCAACGAGGCGCTCGGCGAAGGAGCCGGA 416508 >seq1439 Length=74689 Score = 141 bits (156), Expect = 1e-28 Identities = 122/151 (81%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086 |||||| |||||||||||||||||||| || || || ||| ||||| |||||||| || Sbjct 62508 GTGGAGGCCCTCGTCACGGGAGATGAGCTCGTTTGAAAAGGTGAGACCCGGCATGAGGCC 62567 Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 130146 |||||||| | |||||| || || || || ||||| ||||||||||| ||||| || || Sbjct 62568 TCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCGGAGAAGAAGATGCCCTCGACGCA 62627 Query 130147 CGCGAACGCAAAGAGACGCTCAGCAAAGGAG 130177 ||||| |||| ||| ||||| || || ||| Sbjct 62628 GGCGAAGGCAACGAGGCGCTCGGCGAATGAG 62658 >seq202 Length=395113 Score = 141 bits (156), Expect = 1e-28 Identities = 129/163 (79%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 130016 GCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 130075 ||||| || ||| || |||||||||||||||||||| || || |||||| ||||| Sbjct 244047 GCAAAGTCGCAGTGAAGGCCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTGAGACCG 244106 Query 130076 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 130135 |||||||| || |||||||| | |||||| || || || || ||||| ||||| ||||| Sbjct 244107 GGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCGGAGAAAAAGATG 244166 Query 130136 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGC 130178 ||||| || || ||||| || | ||| ||||| || ||||||| Sbjct 244167 CCCTCGACGCAGGCGAAGGCGACGAGTCGCTCGGCGAAGGAGC 244209 >seq125 Length=520858 Score = 136 bits (150), Expect = 5e-27 Identities = 123/155 (79%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 130028 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCC 130087 || || ||||||||||||||||| || || ||||||||| || || |||||||| || Sbjct 302553 TGAAGGCCCTCGTCACGGGAGATAAGCTCGTTCGAGAAGGTGAGCCCCGGCATGAGGCCG 302612 Query 130088 CGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACAC 130147 |||||||| | ||| || || || || || ||||||||||||||||| ||||| ||||| Sbjct 302613 CGCTTCTTGAGCCAAAAGATAGCGCAGAAGGAGCCAGAGAAGAAGATTCCCTCGACACAG 302672 Query 130148 GCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGA 130182 ||||| || | | ||||| ||||| |||| ||| Sbjct 302673 GCGAAGGCGACAATTCGCTCGGCAAACGAGCCGGA 302707 >seq215 Length=379446 Score = 105 bits (116), Expect = 8e-18 Identities = 260/387 (67%), Gaps = 8/387 (2%) Strand=Plus/Minus Query 14066 TCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCG 14125 ||||| ||||| || || || | || || || || || |||||| ||||| || Sbjct 310873 TCAAATCGACCAGGCCGAAGTAAAGCAGAATCTAGAATGTCTGCGCGGTTGGTCGCTGCA 310814 Query 14126 ATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATG 14185 ||||||| || || || | |||||||||||||| |||||||| || ||||||| Sbjct 310813 ATGACAATTATACCAGTATTTCCTTCAAAGCCATCCATTTCAGTCAAAAGCTGATTGAGA 310754 Query 14186 GTTTGTTCGCGTTCATCATTCGCAGGCATACCA--CCCGCACTGCGTTGCTTACCGACGG 14243 || ||||| | ||||||||| | | | | | || | | | |||| |||| |||| Sbjct 310753 GTCTGTTCTCTTTCATCATTTCC--TCCTCCAATTCCTGTTCCTCTTTGCCTACCAACGG 310696 Query 14244 CGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTC-ACGGGCAACTTCAAAGATA 14302 | || || ||||| | || || ||||| || ||| || || | ||| ||| | Sbjct 310695 CATCGATCTCATCAACAAACACAATACAAGGAGCATTCTCTTTGGCCTTCTTGAAA-AGG 310637 Query 14303 TCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGAACAT 14362 || || |||| ||||||||||| |||||||| || ||||| | | | ||| || Sbjct 310636 TCACGAACTCGTGAAGCACCGACACCAACAAACATTTCTACAAATTCAGATCCTGAA-AT 310578 Query 14363 TG-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGT 14421 || || || ||||| | |||||| || || || ||| || | ||||| || || Sbjct 310577 TGAGAAAAATGGGACACCTGCTTCACCAGCAATTGCCTTGGCAAGCAAAGTCTTTCCAGT 310518 Query 14422 CCCTGGTTTCCCTGCGAGAAGGGCACC 14448 ||||| ||| |||||| |||| Sbjct 310517 TCCTGGAGGACCTATTAGAAGGACACC 310491 >seq1456 Length=73808 Score = 91.5 bits (100), Expect = 2e-13 Identities = 188/277 (68%), Gaps = 2/277 (1%) Strand=Plus/Plus Query 14153 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCA-GG 14211 || ||||||||||| |||||||| ||||||||||| || || | ||||| || || | Sbjct 65686 AACCCATCCATCTCTGTCAAGAGCTGATTGATGGTCTGCTCCCTCTCATCGTTGCCACCG 65745 Query 14212 CATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACA 14271 | | | || || | | ||| | || || || ||||||||||||||||| || || || Sbjct 65746 CCAAGC-CCGGCCCCTCTCTGCCTTCCCACCGCATCAATTTCATCGATGAACACAATGCA 65804 Query 14272 TGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCAC 14331 ||| || | || || || | ||| || || ||| || || |||||||| Sbjct 65805 CGGTGCCTTAGCCTTCGCTTTCTCGAACAAATCCCGGACCCTCGACGCCCCCACACCCAC 65864 Query 14332 AAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCACCCGC 14391 |||| |||||| || | || || | || || |||||| ||| | || ||||| Sbjct 65865 GAACAGCTCCACGAACTCGGACGCCGCGCACGAGAAGAAGGGCACGCCGGCCTCTCCCGC 65924 Query 14392 GATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGT 14428 | |||||||| | || || || || || || ||| Sbjct 65925 CACAGCTCGGGCCAACAGCGTTTTGCCGGTGCCGGGT 65961 >seq308 Length=314964 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/225 (69%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 14153 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCA-GG 14211 || ||||||||||| |||||||| |||||||| || || || | |||||||| || | Sbjct 202545 AACCCATCCATCTCCGTCAAGAGCTGATTGATAGTCTGCTCCCTCTCATCATTGCCACCG 202604 Query 14212 CATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACA 14271 | | | || || | | ||| | || || || |||||||||||||||||||| || || Sbjct 202605 CCAAGC-CCAGCTCCTCTCTGCCTTCCCACCGCATCAATTTCATCGATGAAAACAATGCA 202663 Query 14272 TGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCAC 14331 ||| || | || ||||| | ||| || || ||| || || || ||||| Sbjct 202664 CGGTGCCTTAGCCTTTGCCTTCTCAAACAGATCCCGGACCCTCGACGCCCCCACTCCCAC 202723 Query 14332 AAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGAC 14376 ||| | |||||| || | || || | ||| || ||| ||||| Sbjct 202724 AAATAGCTCCACGAACTCGGACGCTGCACACGAGAAGAACGGGAC 202768 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618215539547400