Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20itinerans_20[genbank_20GCA_5F001649415.1_202016-05-21] 28,415 sequences; 455,349,267 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq125 165 9e-36 seq202 159 4e-34 seq1439 149 7e-31 seq83 145 9e-30 seq2275 140 4e-28 seq215 132 6e-26 seq308 102 1e-16 seq1456 84.2 3e-11 >seq125 Length=520858 Score = 165 bits (182), Expect = 9e-36 Identities = 126/149 (85%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 94795 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 94854 || ||||| |||||| | |||| || || ||||| ||||| |||||||||||||| ||| Sbjct 302701 TCGTTTGCCGAGCGAATTGTCGCCTTCGCCTGTGTCGAGGGAATCTTCTTCTCTGGCTCC 302642 Query 94855 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 94914 ||||||||||| | ||||||||||||||| || |||||||| || ||| |||||| ||| Sbjct 302641 TTCTGCGCTATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCGGGGCTCACCTTCTCGAAC 302582 Query 94915 GAGCTTATCTCTCGTGACGAGGGACTCCA 94943 ||||||||||| ||||||||||| || || Sbjct 302581 GAGCTTATCTCCCGTGACGAGGGCCTTCA 302553 >seq202 Length=395113 Score = 159 bits (176), Expect = 4e-34 Identities = 132/161 (82%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 94795 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 94854 ||||| || ||||||||| |||| || || || || ||||| ||||| ||||| || ||| Sbjct 244207 TCCTTCGCCGAGCGACTCGTCGCCTTCGCCTGCGTCGAGGGCATCTTTTTCTCCGGCTCC 244148 Query 94855 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 94914 |||||||| || | |||||||||||||| || |||||||| |||||| |||||||||| Sbjct 244147 TTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTCACCTTCTCCAAC 244088 Query 94915 GAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 ||||| ||||| ||||||||||| || ||| || ||||| Sbjct 244087 GAGCTCATCTCCCGTGACGAGGGCCTTCACTGCGACTTTGC 244047 >seq1439 Length=74689 Score = 149 bits (164), Expect = 7e-31 Identities = 123/150 (82%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 94795 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 94854 || || || ||||| ||| | || || || || || ||||| ||||||||||| || ||| Sbjct 62657 TCATTCGCCGAGCGCCTCGTTGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCCGGCTCC 62598 Query 94855 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 94914 |||||||| || | ||||||||||||||||| |||||||| |||||| ||| || ||| Sbjct 62597 TTCTGCGCCATCTTCTGGCTCAAGAAGCGAGGCCTCATGCCGGGTCTCACCTTTTCAAAC 62538 Query 94915 GAGCTTATCTCTCGTGACGAGGGACTCCAC 94944 ||||| ||||| ||||||||||| |||||| Sbjct 62537 GAGCTCATCTCCCGTGACGAGGGCCTCCAC 62508 >seq83 Length=609517 Score = 145 bits (160), Expect = 9e-30 Identities = 122/150 (81%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 94795 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 94854 ||||| || ||||| ||| | || || || || || ||||| ||||||||||| || ||| Sbjct 416514 TCCTTCGCCGAGCGCCTCGTTGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCCGGCTCC 416573 Query 94855 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 94914 ||||||||||| | ||||||||||| || || |||||||| || ||| |||||||||| Sbjct 416574 TTCTGCGCTATCTTCTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTCACCTTCTCCAAC 416633 Query 94915 GAGCTTATCTCTCGTGACGAGGGACTCCAC 94944 || || ||||| || |||||||| |||||| Sbjct 416634 GAACTCATCTCCCGCGACGAGGGCCTCCAC 416663 >seq2275 Length=40372 Score = 140 bits (154), Expect = 4e-28 Identities = 268/388 (69%), Gaps = 8/388 (2%) Strand=Plus/Plus Query 9527 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9586 ||||| || || || ||||| | || ||| || || || |||| || || || ||| Sbjct 23142 TCAAATCGCCCAGGCCGAAGCAAAGCAGAATCTAGAATGTCTGCGCGGTTGGTTGCTGCG 23201 Query 9587 ATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATA 9646 || |||| |||||||| | ||||| ||||||||||| |||||||| || |||| | Sbjct 23202 ATCACAATTATACCTGTATTGCCTTCAAAGCCATCCATCTCGGTCAAAAGCTGATTAAGA 23261 Query 9647 GTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCACGG 9704 || ||||||| ||||||||| || | | | | || | | | |||| |||| || | Sbjct 23262 GTCTGTTCCCTTTCATCATTTCCT--CCTCCGATTCCTGTTCCTCTTTGCCTTCCAACAG 23319 Query 9705 CATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTC-GCGAGCGACTTCAAAGAGA 9763 ||||||||||||||| || || ||||| || ||| || | | ||| ||| ||| Sbjct 23320 CATCAATCTCATCAACAAACACAATGCAAGGAGCATTCTCTTTGGCCTTCTTGAAA-AGA 23378 Query 9764 TCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACAT 9823 || || || || || || |||||||||||||| || ||||| | | | ||| || Sbjct 23379 TCACGAACTCGAGAAGCACCAACACCAACAAACATTTCTACAAATTCAGATCCTGAA-AT 23437 Query 9824 TG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGT 9882 || || || |||||| | ||||| ||||| || || || | ||||| || || Sbjct 23438 TGAGAAAAATGGGACACCTGCCTCACCAGCAATTGCCTTAGCAAGCAAGGTCTTCCCAGT 23497 Query 9883 ACCTGGCTTACCCGCGAGGAGGGCACCT 9910 ||||| ||| | || ||| ||||| Sbjct 23498 TCCTGGAGGACCAACAAGAAGGACACCT 23525 >seq215 Length=379446 Score = 132 bits (146), Expect = 6e-26 Identities = 306/452 (68%), Gaps = 12/452 (3%) Strand=Plus/Minus Query 9527 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9586 ||||| ||||| || ||||| | || ||| || || || |||| || ||||| || Sbjct 310873 TCAAATCGACCAGGCCGAAGTAAAGCAGAATCTAGAATGTCTGCGCGGTTGGTCGCTGCA 310814 Query 9587 ATGACAACAATACCTGT--TTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAA 9644 ||||||| ||||| || ||| || |||| |||||||| || |||||||| || || | Sbjct 310813 ATGACAATTATACCAGTATTTCCTT--CAAAGCCATCCATTTCAGTCAAAAGCTGATTGA 310756 Query 9645 TAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCAC 9702 ||| ||||| | ||||||||| || | | | | || | | | |||| | || || Sbjct 310755 GAGTCTGTTCTCTTTCATCATTTCCT--CCTCCAATTCCTGTTCCTCTTTGCCTACCAAC 310698 Query 9703 GGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGA-CTTCAAAGA 9761 |||||| |||||||||| || || || || || ||| || || ||| ||| | Sbjct 310697 GGCATCGATCTCATCAACAAACACAATACAAGGAGCATTCTCTTTGGCCTTCTTGAAA-A 310639 Query 9762 GATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAAC 9821 | || || || || || || |||||||||||||| || ||||| | | | ||| Sbjct 310638 GGTCACGAACTCGTGAAGCACCGACACCAACAAACATTTCTACAAATTCAGATCCTGAA- 310580 Query 9822 ATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCC 9880 |||| || || |||||| | |||||| ||||| || ||| || | |||||| || Sbjct 310579 ATTGAGAAAAATGGGACACCTGCTTCACCAGCAATTGCCTTGGCAAGCAAAGTCTTTCCA 310520 Query 9881 GTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAAGTAT 9940 || ||||| ||| || ||| ||||| ||||| ||| || | || | || Sbjct 310519 GTTCCTGGAGGACCTATTAGAAGGACACCTTTAGGAATACGGGCTCCCACTGCAGTGAAT 310460 Query 9941 CTCTCAGGTTGCTTAAGAAAATCCACAATTTC 9972 ||||| || | || || || || || | ||| Sbjct 310459 CTCTCGGGCTTTTTCAGGAACTCAACTACTTC 310428 >seq308 Length=314964 Score = 102 bits (112), Expect = 1e-16 Identities = 255/384 (66%), Gaps = 14/384 (4%) Strand=Plus/Plus Query 9614 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATT--CGCTG 9671 || ||||||||||| ||||| || || || ||||| || |||| |||||||| | | | Sbjct 202545 AACCCATCCATCTCCGTCAAGAGCTGATTGATAGTCTGCTCCCTCTCATCATTGCCACCG 202604 Query 9672 GCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 9731 || | ||||| | | ||| ||||||| |||||||| ||||| ||||| || |||| Sbjct 202605 CCAAGC--CCAGCTCCTCTCTGCCTTCCCACCGCATCAATTTCATCGATGAAAACAATGC 202662 Query 9732 ATGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAA 9791 | ||| || | || ||||| |||||||| || | | || ||||| || | Sbjct 202663 ACGGTGCCTTAGCCTTTGCCTTCTCAAACAGATCCCGGACCCTCGACGCCCCCACTCCCA 202722 Query 9792 CAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCG 9851 |||| | |||||| || | | || | ||| || ||| ||||| | || || | Sbjct 202723 CAAATAGCTCCACGAACTCGGACGCTGCACACGAGAAGAACGGGACTCCGGCCTCTCCTG 202782 Query 9852 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTC 9911 | | || | || || || ||||| || ||||| ||| |||| | | || |||| Sbjct 202783 CCACCGCCCTCGCCAGCAGCGTCTTGCCGGTACCCGGCGGACCCACCAAAAGACAACCTT 202842 Query 9912 GTGGAATCTTGGCGCCACTTCCAAAG-----TATCTCTCAGGTTGCTTAAGAAAATCCAC 9966 |||||||| |||| |||||| || | || || | ||| | || ||||| Sbjct 202843 TAGGAATCTT--CGCC---CCCAAAGCCGTATACTTGTCCGGGTTCTTCAAGAAGTCCAC 202897 Query 9967 AATTTCTTCCAATTCATCTTTGGC 9990 | ||| | ||| ||| |||||| Sbjct 202898 TACTTCCTGCAACTCAAGTTTGGC 202921 >seq1456 Length=73808 Score = 84.2 bits (92), Expect = 3e-11 Identities = 212/320 (66%), Gaps = 12/320 (4%) Strand=Plus/Plus Query 9614 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATT--CGCTG 9671 || ||||||||||||||||| || || || || || || |||| ||||| || | | | Sbjct 65686 AACCCATCCATCTCTGTCAAGAGCTGATTGATGGTCTGCTCCCTCTCATCGTTGCCACCG 65745 Query 9672 GCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 9731 || | || || | | ||| ||||||| |||||||| ||||| ||||| || |||| Sbjct 65746 CCAAGC--CCGGCCCCTCTCTGCCTTCCCACCGCATCAATTTCATCGATGAACACAATGC 65803 Query 9732 ATGGTTGATT----TTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACA 9787 | ||| || ||||| | || || | |||||| || | | || |||||| Sbjct 65804 ACGGTGCCTTAGCCTTCGCTTTC----TCGAACAAATCCCGGACCCTCGACGCCCCCACA 65859 Query 9788 CCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCA 9847 || || |||| |||||| || | | || | || || |||||| || | || Sbjct 65860 CCCACGAACAGCTCCACGAACTCGGACGCCGCGCACGAGAAGAAGGGCACGCCGGCCTCT 65919 Query 9848 CCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCA 9907 ||||| | |||||||| | || || || || || || || ||| | | |||| | Sbjct 65920 CCCGCCACAGCTCGGGCCAACAGCGTTTTGCCGGTGCCGGGTGGGCCCACCAAGAGGCAA 65979 Query 9908 CCTCGTGGAATCTTGGCGCC 9927 ||| || ||||| || || Sbjct 65980 CCTTTGGGGATCTTCGCCCC 65999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583053633054600