Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20itinerans_20[genbank_20GCA_5F001649415.1_202016-05-21] 28,415 sequences; 455,349,267 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq83 212 7e-50 seq202 210 2e-49 seq125 203 4e-47 seq1439 181 1e-40 seq62 86.0 7e-12 >seq83 Length=609517 Score = 212 bits (234), Expect = 7e-50 Identities = 446/655 (68%), Gaps = 10/655 (2%) Strand=Plus/Plus Query 59769 GATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATCAG-TCGTTCAACGAGTCTAT 59827 || |||||| | |||||||||| | ||||||| || ||| ||| || |||| || Sbjct 416313 GACGTCCAGCTCCCCGAGGCCCGCGCCTTCTACGGGTTCCAGATCGC-CATCGAGAACAT 416371 Query 59828 CCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGC 59887 ||||||||||| |||||| ||| | |||| | | |||||||| || || || ||| Sbjct 416372 CCACTCCGAGATGTACTCCCTCCTCCTCGACACCTACGTCAAGGACCCCGACGACAAGTA 416431 Query 59888 TGGTCTGTTCCGTGCCATAGAGACGTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCAT 59947 | | || |||| ||||| || || |||||| || | ||| || || |||||| | Sbjct 416432 TCGCCTCTTCCACGCCATCGATACCGTCCCCGCCGTCGCCCGAAAGGCCGACTGGGCCCT 416491 Query 59948 GCAGTGGAT-GAGTCCTGGAGCATCATTTGCACAACGTCTCATAGCTTTTGCATGCGTGG 60006 | ||||| || |||| || || || || | || ||| | || || || ||||| | Sbjct 416492 TCGCTGGATCGATTCCTCCGGC-TCCTTCGCCGAGCGCCTCGTTGCCTTCGCCTGCGTCG 416550 Query 60007 AAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCA 60066 | || ||||||||||| ||||| ||||| ||||| ||||||||||| || || ||||||| Sbjct 416551 AGGGCATCTTCTTCTCCGGCTCCTTCTGCGCTATCTTCTGGCTCAAGAAACGCGGCCTCA 416610 Query 60067 TGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCATCAGGAGT 60126 |||| ||||| | ||||||||||| || || ||||| |||||||||||||| || | Sbjct 416611 TGCCCGGCCTCACCTTCTCCAACGAACTCATCTCCCGCGACGAGGGCCTCCACTGCGACT 416670 Query 60127 TTGCAGTGACGCTCTATTCACACCTATTGGAAAAATGCCCTTCCAAGGA---TATTCACA 60183 | || || | | || | || | | | || | | | ||| |||| | | Sbjct 416671 TCGC-CTGCCTC-CTCTACAGCCTCCTCCGCAACAAG-CTGTCCGAGGAAGCGGTCCGGG 416727 Query 60184 AGATTGTTCAGTGGGCTTGTGAAGTGGAGAGCGAGTTCATCACAGAAGCGCTTCCATGCA 60243 || ||| | ||| ||| | || | |||||| || || || || || | Sbjct 416728 CAATCGTTGCGGACGCTGTTGACATCGAACGGGAGTTCGTCTGCGACGCACTCCCTGTCG 416787 Query 60244 AACTCATAGGTATGGACGCTGGAGAAATGACGCAGTACATTCAGTTTGTCGCGGACCGCC 60303 ||| | || ||| ||| || |||| |||||||| |||| || || ||||||| Sbjct 416788 CTCTCGTCGGGATGAACGTTGATCTCATGAGCCAGTACATCGAGTTCGTGGCCGACCGCC 416847 Query 60304 TCATGGCCCAGTTTGGAGAAGGACCAATTTACGGCGTGAATAACCCTTTCGACTGGATGG 60363 | | | | | || | || || ||| | | | ||||| ||||||||||||| Sbjct 416848 TGCTCGGGGCGCTGGGCCACGGCAAGATGTACCGGGCGGCCAACCCCTTCGACTGGATGG 416907 Query 60364 AGACCATCTCGTTGGAAGGGAAGACCAACTTCTTTGAGAAGCGGGTCGGGGATTA 60418 || ||||||| || | || ||| |||||||||| |||||| |||| || || || Sbjct 416908 AGCTCATCTCGCTGCAGGGTAAGGCCAACTTCTTCGAGAAGAGGGTAGGCGAGTA 416962 >seq202 Length=395113 Score = 210 bits (232), Expect = 2e-49 Identities = 450/657 (68%), Gaps = 14/657 (2%) Strand=Plus/Minus Query 59769 GATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATCAGTCGTTCAA-CGAGTCTAT 59827 || ||||| | |||||||||| | ||||||| | ||| | ||| |||| || Sbjct 244408 GACGTCCAACTCCCCGAGGCCCGCGCCTTCTACGGTTTCCAGAT-TGCAATCGAGAACAT 244350 Query 59828 CCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGC 59887 ||||||||||| |||||| || | |||||| || ||||||| || || ||||| Sbjct 244349 CCACTCCGAGATGTACTCCCTTCTACTCGATACGTACATCAAGGACCCCGACCAGAAGTT 244290 Query 59888 TGGTCTGTTCCGTGCCATAGAGA-CGTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCA 59946 | | || |||| ||||| || | ||||||| || || | || || || |||||| Sbjct 244289 TCGCCTCTTCCACGCCATCGACAACGTCCCC-GCGGTCGCCCGGAAGGCCGACTGGGCCC 244231 Query 59947 TGCAGTGGAT-GAGTCCTGGAGCATCATTTGCACAACGTCTCATAGCTTTTGCATGCGTG 60005 | || ||||| ||||| | || || || || | || ||| | || || || ||||| Sbjct 244230 TCCAATGGATTGAGTCTTCTGGC-TCCTTCGCCGAGCGACTCGTCGCCTTCGCCTGCGTC 244172 Query 60006 GAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTC 60065 || || ||||| ||||| ||||| ||||| || || ||||||||||| ||||| |||||| Sbjct 244171 GAGGGCATCTTTTTCTCCGGCTCCTTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTC 244112 Query 60066 ATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCATCAGGAG 60125 ||||| || || | |||||||||||||| || ||||| ||||||||||| || || Sbjct 244111 ATGCCCGGTCTCACCTTCTCCAACGAGCTCATCTCCCGTGACGAGGGCCTTCACTGCGAC 244052 Query 60126 TTTGCAGTGACGCTCTATTCACACCTATTGGAAAAATGCCCTTCCAAGGATA---TTCAC 60182 ||||| || | | || | | | | | || | || | ||| |||| | | | Sbjct 244051 TTTGC-TTGCCTC-CTTTACGGCCTCCTCCGCAACAAGCTC-TCCGAGGACAAGGTCCGG 243995 Query 60183 AAGATTGTT-CAGTGGGCTTGTGAAGTGGAGAGCGAGTTCATCACAGAAGCGCTTCCATG 60241 || ||| | | | | | ||| | ||| | |||||| || || || || || Sbjct 243994 GCTATCGTTGCCGACGCCGT-TGACATCGAGCGGGAGTTCGTCTGCGACGCCCTGCCCGT 243936 Query 60242 CAAACTCATAGGTATGGACGCTGGAGAAATGACGCAGTACATTCAGTTTGTCGCGGACCG 60301 | ||| | || ||| | | || |||| |||||||| ||||| |||| ||||| Sbjct 243935 CGCGCTCGTCGGGATGAATGGTGTCCTGATGAGCCAGTACATCGAGTTTATCGCCGACCG 243876 Query 60302 CCTCATGGCCCAGTTTGGAGAAGGACCAATTTACGGCGTGAATAACCCTTTCGACTGGAT 60361 ||| | | | | || | || || ||||| || ||||||||||||||||| Sbjct 243875 CCTGCTCGGGGCGCTGGGCTACGGCAAGATGTACGGGGTCTCCAACCCTTTCGACTGGAT 243816 Query 60362 GGAGACCATCTCGTTGGAAGGGAAGACCAACTTCTTTGAGAAGCGGGTCGGGGATTA 60418 ||| ||||||| || | ||||||||||||||||| ||||| ||||||| || || Sbjct 243815 GGAACTCATCTCGCTGCAGGGGAAGACCAACTTCTTCGAGAAAAGGGTCGGTGAGTA 243759 >seq125 Length=520858 Score = 203 bits (224), Expect = 4e-47 Identities = 260/353 (74%), Gaps = 4/353 (1%) Strand=Plus/Minus Query 59769 GATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATCAG-TCGTTCAACGAGTCTAT 59827 || |||||| | ||||||| || | ||||||| | ||| ||| || |||| || Sbjct 302902 GACGTCCAGCTCCCCGAGGCTCGCGCCTTCTACGGCTTCCAGATCGC-CATCGAGAACAT 302844 Query 59828 CCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGC 59887 |||||| |||| |||||| ||| | | || | | ||||||| || || |||||| | Sbjct 302843 CCACTCTGAGATGTACTCCCTCCTCCTGGACACCTACATCAAGGACCCTGACGAGAAGAC 302784 Query 59888 TGGTCTGTTCCGTGCCATAGAGACGTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCAT 59947 |||| ||||||||||| || ||| |||| | || | ||| || || |||||| | Sbjct 302783 CCGTCTCTTCCGTGCCATCGACACGGTCCCCTCTGTCTCCCGAAAGGCCGACTGGGCCCT 302724 Query 59948 GCAGTGGAT-GAGTCCTGGAGCATCATTTGCACAACGTCTCATAGCTTTTGCATGCGTGG 60006 || ||||| || || | || || ||||| | || | | || || || || || | Sbjct 302723 GCGCTGGATTGAATCTTCCGGC-TCGTTTGCCGAGCGAATTGTCGCCTTCGCCTGTGTCG 302665 Query 60007 AAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCA 60066 | |||||||||||||||||||| ||||| ||||| || |||||||| ||||| ||||||| Sbjct 302664 AGGGAATCTTCTTCTCTGGCTCCTTCTGCGCTATCTTTTGGCTCAAGAAGCGCGGCCTCA 302605 Query 60067 TGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCAT 60119 ||||||| || | ||||| |||||||| || ||||| ||||||||||| ||| Sbjct 302604 TGCCGGGGCTCACCTTCTCGAACGAGCTTATCTCCCGTGACGAGGGCCTTCAT 302552 >seq1439 Length=74689 Score = 181 bits (200), Expect = 1e-40 Identities = 451/663 (68%), Gaps = 24/663 (4%) Strand=Plus/Minus Query 59769 GATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATCAG-TCGTTCAACGAGTCTAT 59827 || |||||| || | |||||||| | ||||||| | ||| ||| || |||| || Sbjct 62858 GACGTCCAGCTTCCTGAGGCCCGCGCCTTCTACGGCTTCCAGATCGC-CATCGAGAACAT 62800 Query 59828 CCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGC 59887 |||||| |||| ||| || ||| | |||| | | ||||||| || | |||||| | Sbjct 62799 CCACTCTGAGATGTATTCTCTCCTCCTCGACACCTACATCAAGGACCCCGGCGAGAAGTC 62740 Query 59888 TGGTCTGTTCCGTGCCATAGAGAC-GTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCA 59946 | || |||| |||||| || || ||||| | | || | || || || ||||| Sbjct 62739 CCGCCTCTTCCATGCCATTGACACCGTCCCTC-CTGTCGCCCGCAAGGCCGAGTGGGCGC 62681 Query 59947 TGCAGTGGATGAG-TCCTGGAGCATCATTTGCACAACGTCTCATAGCTTTTGCATGCGTG 60005 | | ||||| | |||| | ||||| || | || ||| | || || || ||||| Sbjct 62680 TACGCTGGATCGGATCCTCTGAC-TCATTCGCCGAGCGCCTCGTTGCCTTCGCCTGCGTC 62622 Query 60006 GAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTC 60065 || || ||||||||||| ||||| ||||| || || ||||||||||| ||||| |||||| Sbjct 62621 GAGGGCATCTTCTTCTCCGGCTCCTTCTGCGCCATCTTCTGGCTCAAGAAGCGAGGCCTC 62562 Query 60066 ATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCATCAGGAG 60125 |||||||| || | || || |||||||| || ||||| |||||||||||||| || Sbjct 62561 ATGCCGGGTCTCACCTTTTCAAACGAGCTCATCTCCCGTGACGAGGGCCTCCACTGCGAC 62502 Query 60126 TTTGCAGTGACGCTCTATTCACACCTATTGGAAAAATGCCCTTCCAAGGA---TATTCAC 60182 || || || | | || | || | | || | || | || | ||| || | | | | Sbjct 62501 TTCGC-CTGCCTC-CTCTACAGTCTTCTTCGCAACAAGCTC-TCCGAGTACCGTGTCCGT 62445 Query 60183 AAGATTGTT-CAGTGGGCTTGTGAAGTGGAGAGCGAGTTCATCACAGAAGCGCTTCCATG 60241 | || ||| | | | | | ||| | || | || ||| || || || || || Sbjct 62444 GAAATCGTTGCCGATGCCGT-TGACATCGAACGGGAATTCGTCTGCGATGCTCTGCCGGT 62386 Query 60242 CAAACTCATAGGTATGGACGCTGGAGA---AATGACGCAGTACATTCAGTTTGTCGCGGA 60298 | || | || ||| | ||| || |||| ||||| || |||| || || || Sbjct 62385 CGCCCTTGTCGGGATGAA---TGGCGACCTCATGAGTCAGTATATCGAGTTCGTGGCCGA 62329 Query 60299 CCGCCT-CATGGCCCAGTTTGGAGAAGGACCAATT-TACGGCGTGAATAACCCTTTCGAC 60356 ||||| | ||| | | | || | ||| | || ||||| | | ||||| |||||| Sbjct 62328 TCGCCTGCTTGGGGC-GCTAGG-TTACGACAAGTTGTACGGGGCGGCCAACCCCTTCGAC 62271 Query 60357 TGGATGGAGACCATCTCGTTGGAAGGGAAGACCAACTTCTTTGAGAAGCGGGTCGGGGAT 60416 ||||||||| ||||||| || | |||||||| |||||||| |||||| ||||||| || Sbjct 62270 TGGATGGAGCTCATCTCGCTGCAGGGGAAGACAAACTTCTTCGAGAAGAGGGTCGGCGAC 62211 Query 60417 TAT 60419 ||| Sbjct 62210 TAT 62208 >seq62 Length=673860 Score = 86.0 bits (94), Expect = 7e-12 Identities = 189/278 (68%), Gaps = 9/278 (3%) Strand=Plus/Plus Query 144724 TCGCCTTCATATCCGGCGTG---GCGATGAAAGTCCGAGTGAATGATGATGTCATTCAGA 144780 |||||||||| |||||||| || | || |||| ||| ||||| ||| | | || Sbjct 186755 TCGCCTTCATCACCGGCGTGCCCGCCAGGA---TCCGTGTGCGGGATGAAGTCGTCCGGA 186811 Query 144781 TGGGCGAGGTGAATTTTCTGTGCGTCCACCCAAAACTACGTCACAAAAAG-CTCGCACCG 144839 ||| |||||| || || || ||||||||| ||||| || | |||| | ||||| || Sbjct 186812 TGGCCGAGGTCAACTTCCTCTGCGTCCACAAGAAACTGCG-CTCAAAGCGGCTCGCCCCC 186870 Query 144840 TTGATGATCCGTGAGATTACCCGACGGATCAATCTTCACGAGATCTGGCAGGCCGTATAT 144899 ||||||| ||| | ||| | ||| || || | | | ||||||||||| | ||| Sbjct 186871 GTGATGATAAAGGAGGTCACCAGGCGGGTCCATTTGGAGAACATCTGGCAGGCAGCCTAT 186930 Query 144900 ACGGGCGCCGTCTTGCGCCCGGACGTCATCGCGTCGGCTCGTTACTGGCACCGGCCTATA 144959 || | || ||| | | ||| |||| || | || |||||||| || | | Sbjct 186931 ACAGCCGGGGTCGTCCTGCCGACTCCCATCACGACCTGCCGCTACTGGCATCGCTCGCTG 186990 Query 144960 GACGTCAAGAAACTCGTCGATATCGGGTTCTTCCCGCC 144997 | ||||||||| ||||| | |||||| ||||||| Sbjct 186991 AATCCAAAGAAACTCATCGATGTGGGGTTC-TCCCGCC 187027 Score = 86.0 bits (94), Expect = 7e-12 Identities = 189/278 (68%), Gaps = 9/278 (3%) Strand=Plus/Plus Query 144724 TCGCCTTCATATCCGGCGTG---GCGATGAAAGTCCGAGTGAATGATGATGTCATTCAGA 144780 |||||||||| |||||||| || | || |||| ||| ||||| ||| | | || Sbjct 195691 TCGCCTTCATCACCGGCGTGCCCGCCAGGA---TCCGTGTGCGGGATGAAGTCGTCCGGA 195747 Query 144781 TGGGCGAGGTGAATTTTCTGTGCGTCCACCCAAAACTACGTCACAAAAAG-CTCGCACCG 144839 ||| |||||| || || || ||||||||| ||||| || | |||| | ||||| || Sbjct 195748 TGGCCGAGGTCAACTTCCTCTGCGTCCACAAGAAACTGCG-CTCAAAGCGGCTCGCCCCC 195806 Query 144840 TTGATGATCCGTGAGATTACCCGACGGATCAATCTTCACGAGATCTGGCAGGCCGTATAT 144899 ||||||| ||| | ||| | ||| || || | | | ||||||||||| | ||| Sbjct 195807 GTGATGATAAAGGAGGTCACCAGGCGGGTCCATTTGGAGAACATCTGGCAGGCAGCCTAT 195866 Query 144900 ACGGGCGCCGTCTTGCGCCCGGACGTCATCGCGTCGGCTCGTTACTGGCACCGGCCTATA 144959 || | || ||| | | ||| |||| || | || |||||||| || | | Sbjct 195867 ACAGCCGGGGTCGTCCTGCCGACTCCCATCACGACCTGCCGCTACTGGCATCGCTCGCTG 195926 Query 144960 GACGTCAAGAAACTCGTCGATATCGGGTTCTTCCCGCC 144997 | ||||||||| ||||| | |||||| ||||||| Sbjct 195927 AATCCAAAGAAACTCATCGATGTGGGGTTC-TCCCGCC 195963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548329970847600