Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20itinerans_20[genbank_20GCA_5F001649415.1_202016-05-21] 28,415 sequences; 455,349,267 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq125 192 6e-44 seq83 174 2e-38 seq1439 156 5e-33 seq1254 93.3 5e-14 seq127 93.3 5e-14 seq486 91.5 2e-13 seq701 89.7 6e-13 seq204 89.7 6e-13 seq108 89.7 6e-13 seq59 89.7 6e-13 seq1244 86.0 7e-12 seq850 86.0 7e-12 seq61 86.0 7e-12 >seq125 Length=520858 Score = 192 bits (212), Expect = 6e-44 Identities = 372/539 (69%), Gaps = 15/539 (3%) Strand=Plus/Plus Query 74790 TCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAG 74849 || ||||| || | || || ||||| || || |||||||| | ||||||||| || ||| Sbjct 302580 TCGTTCGAGAAGGTGAGCCCCGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATAGCGCAG 302639 Query 74850 AAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAAC 74909 ||||| ||| ||||||||| || |||||||| || |||||||||| || | || ||| Sbjct 302640 AAGGAGCCAGAGAAGAAGATTCCCTCGACACAGGCGAAGGCGACAATTCGCTCGGCAAAC 302699 Query 74910 GGTGCATCGGAAG--TCA-TCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGG 74966 | || |||||| ||| |||| | | ||||| || || ||||| ||| | ||| Sbjct 302700 GA-GC--CGGAAGATTCAATCCAGCGCAGGGCCCAGTCGGCCTTTCGGGAGACAGAGGGG 302756 Query 74967 ACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCA 75026 || || ||||| || ||||||| | | |||||| || || ||||||| | |||| Sbjct 302757 ACCGTGTCGATGGCACGGAAGAGACGGGTCTTCTCGTCAGGGTCCTTGATGTAGGTGTCC 302816 Query 75027 ATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGTTGAACGA-CTGGTACGCGTAGAA 75085 | | || |||||| |||| || || || |||| || ||| |||| | ||||||| Sbjct 302817 AGGAGGAGGGAGTACATCTCAGAGTGGATGTTCTCGATGG-CGATCTGGAAGCCGTAGAA 302875 Query 75086 AGACCGCGCCTCTGCAATCTGTACATCCTT--TGAAAAATTCATGTCGATATTCTCCATG 75143 | || ||||| | | ||| || || |||| | | ||| |||||| | | Sbjct 302876 GGCGCGAGCCTCGGGGAGCTGGACGTCGCGCATGAACCGGGC--GGCGAGATTCTCAAGG 302933 Query 75144 ACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCG 75203 ||||||||||| ||||||||||| ||||| || || ||| ||||||||||| ||| Sbjct 302934 ACGATGCCGTCTGAGGCGGCGAAGAAAGCAAGAACGTGGGAGATGAAGTGGCGCTCGTCG 302993 Query 75204 TCAGTGA---GTTTGTCCCAATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTC 75260 | | || | | | ||||| | |||| || || ||| | |||||| ||||| Sbjct 302994 TGGGAGAGGCGATGCTGCCAATGGGGGACGTCCGGCGACAGATCCACCTCCTCCGCCGTC 303053 Query 75261 CAGAAACTCCCAATCGCCTTTTTGTACAAAGACCACAAGTCAGGGTAATTGATTGGAAA 75319 || || | | |||||| ||||| || ||| | | ||||||| |||| || || Sbjct 303054 CAAAAGGAGGCCACCGCCTTCTTGTAGAACTCCCAGATGGAAGGGTAAGTGATGGGGAA 303112 >seq83 Length=609517 Score = 174 bits (192), Expect = 2e-38 Identities = 348/508 (69%), Gaps = 11/508 (2%) Strand=Plus/Minus Query 74789 TTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACA 74848 ||| || || || | ||||| ||||| || || || ||||| | ||| ||||| || || Sbjct 416636 TTCGTTGGAGAAGGTGAGGCCGGGCATGAGGCCGCGTTTCTTGAGCCAGAAGATAGCGCA 416577 Query 74849 GAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAA 74908 |||||| || |||||||||||| ||||| || || ||||| || ||||| | ||||| Sbjct 416576 GAAGGAGCCGGAGAAGAAGATGCCCTCGACGCAGGCGAAGGCAACGAGGCGCTCGGCGAA 416517 Query 74909 CGGTGCATCGGA--AGTC-ATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGG 74965 || || |||| | || ||||| | ||||| || || ||||| ||| || || Sbjct 416516 -GGAGC--CGGAGGAATCGATCCAGCGAAGGGCCCAGTCGGCCTTTCGGGCGACGGCGGG 416460 Query 74966 GACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTC 75025 ||| |||||||| || |||||||||| ||| || ||||| ||||||||| |||| Sbjct 416459 GACGGTATCGATGGCGTGGAAGAGGCGATACTTGTCGTCGGGGTCCTTGACGTAGGTGTC 416400 Query 75026 AATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGTTGAACGA-CTGGTACGCGTAGA 75084 | | || |||||| |||| || || || |||| || ||| |||| || |||||| Sbjct 416399 GAGGAGGAGGGAGTACATCTCGGAGTGGATGTTCTCGATG-GCGATCTGGAACCCGTAGA 416341 Query 75085 AAGACCGCGCCTCTGCAATCTGTACATCCTTTGAAAAATTCATGTCGATATTCTCCATGA 75144 | | || ||||| | | ||| || || || | | ||| ||||| | || Sbjct 416340 AGGCGCGGGCCTCGGGGAGCTGGACGTCGCGCATGAAGCGCGCGGCGAGGTTCTCGACGA 416281 Query 75145 CGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGT 75204 ||||||| || ||||||||||| || || || || || |||| ||||||| ||| Sbjct 416280 CGATGCCATCGGAGGCGGCGAAGAAGGCGAGGACGTGGGAGACAAAGCGGCGCTCGTCGG 416221 Query 75205 CAGTGA---GTTTGTCCCAATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCC 75261 |||| | | | ||| | |||||| || || || | |||||| |||||| Sbjct 416220 GGGTGAGACGGTGTTGCCAGTGGGAGAGGTCCGGCGACAGGTCCACCTCCTCCGCCGTCC 416161 Query 75262 AGAAACTCCCAATCGCCTTTTTGTACAA 75289 |||| | | |||||| ||||| || Sbjct 416160 AGAACGAGGCCACCGCCTTCTTGTAGAA 416133 >seq1439 Length=74689 Score = 156 bits (172), Expect = 5e-33 Identities = 290/421 (69%), Gaps = 6/421 (1%) Strand=Plus/Plus Query 74790 TCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAG 74849 || || ||||| | || || ||||| || || |||||||| | ||| |||||||| ||| Sbjct 62536 TCGTTTGAAAAGGTGAGACCCGGCATGAGGCCTCGCTTCTTGAGCCAGAAGATGGCGCAG 62595 Query 74850 AAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAAC 74909 ||||| || |||||||||||| ||||| || || ||||| || ||||| | ||||| Sbjct 62596 AAGGAGCCGGAGAAGAAGATGCCCTCGACGCAGGCGAAGGCAACGAGGCGCTCGGCGAAT 62655 Query 74910 GGTGCATCGGAAGTCATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGGACA 74969 | || ||| ||||| | ||||| || || || || ||| | |||||| Sbjct 62656 GAGTCAGAGGATCCGATCCAGCGTAGCGCCCACTCGGCCTTGCGGGCGACAGGAGGGACG 62715 Query 74970 GTATCGATCGCTTGGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATC 75029 || || || || |||||||||| | |||||| |||| ||||||| | |||| | Sbjct 62716 GTGTCAATGGCATGGAAGAGGCGGGACTTCTCGCCGGGGTCCTTGATGTAGGTGTCGAGG 62775 Query 75030 ATAAGTGAGTACGTCTCCGAATGAATCGACTCGTTGAACGA-CTGGTACGCGTAGAAAGA 75088 | || || ||| |||| || || || |||| || ||| |||| | ||||||| | Sbjct 62776 AGGAGAGAATACATCTCAGAGTGGATGTTCTCGATG-GCGATCTGGAAGCCGTAGAAGGC 62834 Query 75089 CCGCGCCTCTGCAATCTGTACATCCTTTGAAAAATTCATGTCG--ATATTCTCCATGACG 75146 || ||||| | || ||| || || | | | | |||| | ||||| | |||| Sbjct 62835 GCGGGCCTCAGGAAGCTGGACGTC--GCGCATGAACCGGGTCGCCAGGTTCTCGAGGACG 62892 Query 75147 ATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCA 75206 |||||||| |||||||| ||||| || || || || |||||| |||| ||| || Sbjct 62893 ATGCCGTCGGAGGCGGCAAAAAAGGCGAGGACATGGGAAATGAAGTGGTGCTCGTCGGCA 62952 Query 75207 G 75207 | Sbjct 62953 G 62953 >seq1254 Length=88389 Score = 93.3 bits (102), Expect = 5e-14 Identities = 67/76 (88%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| ||||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 14303 TGCTTTCATTGAGATTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 14244 Query 79684 TGAGCTACGAAAGCAA 79699 ||||||| |||||||| Sbjct 14243 TGAGCTATGAAAGCAA 14228 Score = 93.3 bits (102), Expect = 5e-14 Identities = 67/76 (88%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| ||||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 16470 TGCTTTCATTGAGATTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 16411 Query 79684 TGAGCTACGAAAGCAA 79699 ||||||| |||||||| Sbjct 16410 TGAGCTATGAAAGCAA 16395 Score = 89.7 bits (98), Expect = 6e-13 Identities = 66/76 (87%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| ||||| |||| ||||||||||||||||||||| ||||| ||||| Sbjct 19089 TGCTTTCATTGAGATTTGAACTCAAGACCTCCCGCTTACTAAACGGGGGCTCTAACCAAC 19030 Query 79684 TGAGCTACGAAAGCAA 79699 ||||||| |||||||| Sbjct 19029 TGAGCTATGAAAGCAA 19014 >seq127 Length=518728 Score = 93.3 bits (102), Expect = 5e-14 Identities = 67/76 (88%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 79623 ACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCA 79681 ||||||||| |||| ||||| |||| ||||||||||||||||||||||||||| |||| Sbjct 143683 ACTGCTTTCATTGAGATTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCA 143624 Query 79682 ATTGAGCTACGAAAGC 79697 | ||||||| |||||| Sbjct 143623 ACTGAGCTATGAAAGC 143608 Score = 93.3 bits (102), Expect = 5e-14 Identities = 67/76 (88%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 79623 ACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCA 79681 ||||||||| |||| ||||| |||| ||||||||||||||||||||||||||| |||| Sbjct 143879 ACTGCTTTCATTGAGATTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCA 143820 Query 79682 ATTGAGCTACGAAAGC 79697 | ||||||| |||||| Sbjct 143819 ACTGAGCTATGAAAGC 143804 >seq486 Length=220741 Score = 91.5 bits (100), Expect = 2e-13 Identities = 67/77 (87%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| ||||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 121315 TGCTTTCATTGAGATTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 121374 Query 79684 TGAGCTACGAAAGCAAA 79700 ||||||| |||||| || Sbjct 121375 TGAGCTATGAAAGCCAA 121391 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| || | ||||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 121141 TGCTTTCATTGGGATTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 121200 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 121201 TGAGCTATGAAAGC 121214 >seq701 Length=161561 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| ||||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 128409 TGCTTTCATTGAGATTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 128350 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 128349 TGAGCTATGAAAGC 128336 >seq204 Length=394486 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| ||||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 93622 TGCTTTCATTGAGATTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 93563 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 93562 TGAGCTATGAAAGC 93549 >seq108 Length=550536 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 45980 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 46039 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 46040 TGAGCTACGAAAGC 46053 Score = 86.0 bits (94), Expect = 7e-12 Identities = 63/72 (88%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 50483 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 50542 Query 79684 TGAGCTACGAAA 79695 |||||||||||| Sbjct 50543 TGAGCTACGAAA 50554 >seq59 Length=682225 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| ||||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 482390 TGCTTTCATTGAGATTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 482449 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 482450 TGAGCTATGAAAGC 482463 >seq1244 Length=89311 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| || || |||| ||||||||||||||||||||||||||| ||||| Sbjct 24369 TGCTTTCATTGAGATTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 24310 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 24309 TGAGCTATGAAAGC 24296 >seq850 Length=131596 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| || || |||| ||||||||||||||||||||||||||| ||||| Sbjct 111092 TGCTTTCATTGAGATTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 111151 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 111152 TGAGCTATGAAAGC 111165 >seq61 Length=679731 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| || || |||| ||||||||||||||||||||||||||| ||||| Sbjct 160457 TGCTTTCATTGAGATTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 160398 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 160397 TGAGCTATGAAAGC 160384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547021635717000