Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20itinerans_20[genbank_20GCA_5F001649415.1_202016-05-21] 28,415 sequences; 455,349,267 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq299 91.5 1e-13 seq193 86.0 4e-12 seq1530 82.4 5e-11 >seq299 Length=319228 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/193 (71%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||||||||| || |||||||| || || | || || || ||| | Sbjct 262175 ATGCAAATTTTTGTGAAAACCCTCACTGGGAAGACCATCACTCTGGAGGTTGAGAGCTCG 262234 Query 27850 G--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 | || || ||||| || || ||| ||| ||||| ||||| |||| || | Sbjct 262235 GACACCATCGACAAT--GTGAAGGCAAAGATACAGGACAAGGAAGGCATTCCTCCAGACC 262292 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| || | || ||||| || || |||||||| || | |||| |||| | || || | Sbjct 262293 AGCAAAGGCTTATCTTTGCTGGCAAGCAATTGGAGGATGGCCGCACCTTGGCTGACTATA 262352 Query 27968 ACATCCAAAAAGA 27980 ||||||| || || Sbjct 262353 ACATCCAGAAGGA 262365 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/193 (70%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||||||||| || |||||||| || || | || || || ||| | Sbjct 261947 ATGCAAATTTTTGTGAAAACCCTCACTGGGAAGACCATCACTCTGGAGGTTGAGAGCTCG 262006 Query 27850 G--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 | || || ||||| || || ||| ||| ||||| || || |||| || | Sbjct 262007 GACACTATCGACAAT--GTGAAGGCAAAGATACAGGACAAGGAGGGCATTCCTCCAGACC 262064 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| || | || ||||| || || |||||||| || | |||| |||| | || || | Sbjct 262065 AGCAAAGGCTCATCTTTGCTGGCAAGCAATTGGAGGATGGCCGCACCTTGGCTGACTATA 262124 Query 27968 ACATCCAAAAAGA 27980 | ||||| || || Sbjct 262125 ATATCCAGAAGGA 262137 >seq193 Length=408959 Score = 86.0 bits (94), Expect = 4e-12 Identities = 149/212 (70%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || || ||||| ||||| |||||||| |||||| | || ||||| ||| | Sbjct 264887 ATGCAGATCTTCGTGAAGACTCTCACTGGGAAGACTATTACCTTGGAGGTCGAGAGCTCG 264946 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || |||| ||||| || || ||||| || || | ||| ||| | Sbjct 264947 GACACCATCGACAAC--GTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGGACC 265004 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAG-CTTGTCCGATTAC 27966 ||||| || | || ||||| || ||||| | || |||| |||| |||| |||||||| Sbjct 265005 AGCAAAGGCTCATCTTTGCAGGCAAACAGCTCGAAGACGGCCGCACTCTTG-CCGATTAC 265063 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGT 27998 |||||||| || ||| ||| | ||| |||| Sbjct 265064 AACATCCAGAAGGAGTCCACGCTCCATCTGGT 265095 >seq1530 Length=69702 Score = 82.4 bits (90), Expect = 5e-11 Identities = 158/231 (68%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||||||||| || || ||||| || || || || || |||| || ||| | Sbjct 25180 AATGCAAATTTTCGTTAAGACTCTCACCGGCAAGACCATCACCCTTGAGGTTGAATCTTC 25121 Query 27849 CGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 ||| | || | ||| || ||| ||||| |||||||| ||| |||| | || Sbjct 25120 CGATACTATTGATAAT--GTGAAAGCTAAAATTCAAGACAAAGAGGGTATTCCCCTAGAT 25063 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 |||||| |||| || ||||| || |||||||| || || | |||| | | | || ||| Sbjct 25062 CAGCAAAGGTTGATCTTTGCTGGGAAACAATTAGAGGATGGTCGCACCCTAGCGGACTAC 25003 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 |||||||| || ||| ||| | || |||| | || | ||||| ||| Sbjct 25002 AACATCCAGAAGGAGTCCACCCTCCACCTGGTGCTCCGCCTTCGTGGTGGC 24952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355739162070705