Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20itinerans_20[genbank_20GCA_5F001649415.1_202016-05-21] 28,415 sequences; 455,349,267 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq403 96.9 3e-15 seq1066 93.3 4e-14 seq193 91.5 1e-13 seq388 89.7 4e-13 seq540 87.8 2e-12 seq299 82.4 7e-11 >seq403 Length=254866 Score = 96.9 bits (106), Expect = 3e-15 Identities = 153/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||||| || || || ||| || || || ||||| ||||| || || || | Sbjct 86286 GCGGAGCACCAGGTGGAGAGTAGACTCCTTCTGGATGTTATAGTCGGCGAGGGTGCGGCC 86227 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 ||| || ||||| || || || || || || ||||||||||| | || | || ||| || Sbjct 86226 GTCCTCCAGCTGCTTCCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTT 86167 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGA 39247 |||| ||| ||| || | ||| | | | ||| || ||||||||| || | |||| Sbjct 86166 GTCCTGGATCTTCGCCTTCA-CGTTGTCGATCGTGTCCGACGACTCCACCTCAAGGGTGA 86108 Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | | || ||||||| ||| || || ||||| ||||| Sbjct 86107 TCGTCTTCCCCGTCAACGTCTTCACGAAGATCTGCAT 86071 >seq1066 Length=105919 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || |||||| ||| || || || || || ||||| || ||||| | || || ||||| Sbjct 79647 TGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTTCGGCCATCCTCGAGCTGC 79588 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 || || || || || ||||||||||| || | || | || ||| |||||| ||| | | Sbjct 79587 TTTCCGGCGAAGATGAGACGCTGCTGATCCGGCGGGATGCCCTCCTTGTCC-TGAATCTT 79529 Query 39202 TGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260 | | ||| | | | ||| || ||| ||||| || | ||||| | || ||||| Sbjct 79528 GGCCTTCACGTTGTCAATCGTGTCCGACGATTCCACCTCGAGGGTGATCGTCTTCCCCGT 79469 Query 39261 CAGCGTTTTAACAAAGATTTGCATCTTTACGCC 39293 |||||| || || ||||| |||||||| |||| Sbjct 79468 CAGCGTCTTCACGAAGATCTGCATCTTGTCGCC 79436 >seq193 Length=408959 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/214 (71%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| ||| |||||| ||| || || || || ||||||||||| || || |||| || Sbjct 265096 CACCAGATGGAGCGTGGACTCCTTCTGGATGTTGTAATCGGCAAGAGTGCGGCCGTCTTC 265037 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||||||||| ||||| || || | |||||||| | || | || ||| |||||| Sbjct 265036 GAGCTGTTTGCCTGCAAAGATGAGCCTTTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTG 264977 Query 39195 GATTTTCTGTTTGAGCGTCG-CCACCGTATC---GCTCGACTCCACGTCCACCGTGATAC 39250 ||| || |||| ||| | | | || || ||| ||| || |||| || ||| Sbjct 264976 GATCTTGGCCTTGA-CGTTGTCGATGGTGTCCGAGCT---CTCGACCTCCAAGGTAATAG 264921 Query 39251 TTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || || || || || || || ||||| ||||| Sbjct 264920 TCTTCCCAGTGAGAGTCTTCACGAAGATCTGCAT 264887 >seq388 Length=261907 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/208 (71%), Gaps = 8/208 (4%) Strand=Plus/Minus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || || ||| ||| ||||| || ||||| || ||||| || || |||| || |||||| Sbjct 215071 TGGAGGGTGGACTCCTTTTGGATGTTATAGTCAGCAAGGGTGCGGCCGTCCTCGAGCTGT 215012 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 ||||| ||||| ||||| | |||||||| | || | || ||| |||||| || || Sbjct 215011 TTGCCGGCAAAGATAAGCCTTTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGAATCTTG 214952 Query 39202 TGTTTGAGCGTCG-CCACCGTATC---GCTCGACTCCACGTCCACCGTGATACTTTTTCC 39257 ||||| ||| | | | || || ||| ||| || || | || || | || || Sbjct 214951 GCTTTGA-CGTTGTCGATGGTGTCCGAGCT---CTCGACCTCAAGGGTAATGGTCTTCCC 214896 Query 39258 CGTCAGCGTTTTAACAAAGATTTGCATC 39285 ||||||||| || || ||||| |||||| Sbjct 214895 CGTCAGCGTCTTCACGAAGATCTGCATC 214868 >seq540 Length=201599 Score = 87.8 bits (96), Expect = 2e-12 Identities = 145/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || || ||| ||| || || || || || ||||| || || || |||| || ||||| Sbjct 110011 TGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGAGTGCGCCCGTCCTCGAGCTGC 110070 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 || || ||||| || || ||||||||||| | || | | ||| |||||| ||| ||| Sbjct 110071 TTCCCGGCAAAGATGAGGCGCTGCTGGTCCGGCGGGATCCCCTCCTTGTCCTGGATCTTC 110130 Query 39202 TGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260 |||| ||| | | | || || |||||||| || | |||||| | || || || Sbjct 110131 GCCTTGA-CGTTGTCGATGGTGTCCGAAGACTCCACCTCGAGGGTGATAGTCTTCCCGGT 110189 Query 39261 CAGCGTTTTAACAAAGATTTGCATCTT 39287 || || || || ||||| |||||||| Sbjct 110190 GAGGGTCTTCACGAAGATCTGCATCTT 110216 >seq299 Length=319228 Score = 82.4 bits (90), Expect = 7e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||| | || || ||| ||| ||||| || || || || ||||| || || | Sbjct 260794 GCGGAGCACAAGGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGCAAGGGTGCGGCC 260735 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 || ||||| || ||||| |||||||| | | |||||||| | ||| | | ||| || Sbjct 260734 ATCCTCAAGTTGCTTGCCAGCAAATATCAACCTTTGCTGGTCCGGGGGTATTCCCTCCTT 260675 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248 ||| ||| || ||||| | | | || || || || || || | ||||| Sbjct 260674 ATCCTGGATCTTGGCTTTGACATTGTCAATTGTGTCAGAGGATTCAACCTCAAGGGTGAT 260615 Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 | ||||| || || ||||| |||||||||||||||| Sbjct 260614 TGTCTTTCCGGTGAGAGTTTTGACAAAGATTTGCATCT 260577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429396845002895