Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20itinerans_20[genbank_20GCA_5F001649415.1_202016-05-21] 28,415 sequences; 455,349,267 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq1475 100 4e-16 seq262 95.1 2e-14 >seq1475 Length=72375 Score = 100 bits (110), Expect = 4e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 77925 TCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGAC 77984 ||||||||||| |||||| |||| | | ||| || |||||| ||||| | ||||||| Sbjct 29783 TCAAATTCATCACCCCAACAATCAGCAAGTCCCGGAGCTTCATTAGGGCAAAACAATGAC 29724 Query 77985 CAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAAT 78044 || | |||| || ||||| || ||||||||||||||| ||||| || ||| ||| Sbjct 29723 CATTGTCCATTACTCTGAACTCTTTCCATAAAGAGATCAGGAATCCAAAGGGCATAAAAC 29664 Query 78045 AGATCTCGGGTTCTATGTTCTTC 78067 || || | | |||||| ||||| Sbjct 29663 AGGTCCCTAGCTCTATGCTCTTC 29641 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 || ||||||||||| || || ||||| ||||| || ||||| | ||| | |||| | Sbjct 28159 GTGCCTGCATTAAACAAGGTGGGAGAAGCATGAGTGAACCACCGCTGAGACATCAGATGG 28100 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 || ||| ||| | || | ||||| || || ||||| || ||||| | ||||| | Sbjct 28099 TAAGTTCTGATAACAGACTTGATGTCATCTTTGTGGATTCCAACAGCTACTCTCATCAGC 28040 Query 78519 ATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAA 78578 || || || || || ||||| ||| | || |||||| | ||||| | |||| | Sbjct 28039 ATGTGTTGTGGCCTCTCAACTACCTTGCCAGATACTTTCAAGAGATATGACCTCTCCAGA 27980 Query 78579 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAAT 78625 |||||||| ||||| |||| || ||| |||| || ||||| || Sbjct 27979 GTTTTAAATCCAAAGTAGTCATAGTCAAAATCTCGATCATAAATTAT 27933 Score = 98.7 bits (108), Expect = 1e-15 Identities = 157/223 (70%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 ||||| ||||| | ||| | || || | ||| | || || | |||||||| |||||| Sbjct 28486 CCTCCTTGATCAACATAACGAGCAGTATCATTGAACACCCTTAGCATTGGAACAATACCA 28427 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 ||||||||||||||||| ||| |||||||| || |||| || || || || || Sbjct 28426 TTAGATGTTCCATTTGTCCCACGGATATAACTGCCTGTTGCTCGGATGTTGTGAACAGAA 28367 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | || |||||||| || ||| ||||| ||| || || | ||||| || || Sbjct 28366 ACACCAATTCCTCCAGCTGACTTGCTTATTATAGCACACTCCTTAAGCGTATCATATATC 28307 Query 78339 CCCTCTATACTGTCATCCATCATG-TTAAGAAGAAAACAGCTA 78380 ||||| || || || || ||||| || ||| ||||||||| Sbjct 28306 CCCTCAATGCTATCTTCTTTCATGCATATCAAG-AAACAGCTA 28265 >seq262 Length=346991 Score = 95.1 bits (104), Expect = 2e-14 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 78158 ACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 78217 |||||| ||||| | ||| | || || | ||| | || || | ||| |||| |||||| Sbjct 236562 ACCTCCTTGATCAACATAACGAGCAGTATCATTGAACACCCTTAGCATGGGAACAATACC 236621 Query 78218 GTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGA 78277 || |||||||||||||| ||| ||||||||||| |||| || || || || || Sbjct 236622 ATTGGATGTTCCATTTGTACCACGGATATAACTTCCTGTTGCACGGATGTTGTGAACAGA 236681 Query 78278 TATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGAT 78337 | || |||||||| || ||| ||||| ||| || |||| ||||| || || Sbjct 236682 AACGCCAATTCCTCCAGCTGACTTGCTTATTATAGCACACTCCTTCAGAGTATCATATAT 236741 Query 78338 ACCCTCTATACTGTCATCCATCATG 78362 ||||| || || || || ||||| Sbjct 236742 TCCCTCAATGCTATCTTCTTTCATG 236766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694422062325600