Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20itinerans_20[genbank_20GCA_5F001649415.1_202016-05-21] 28,415 sequences; 455,349,267 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq262 100 4e-16 seq125 100 4e-16 seq1475 98.7 1e-15 >seq262 Length=346991 Score = 100 bits (110), Expect = 4e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 76753 ACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCC 76812 |||||| ||||| | ||| | ||||| | ||| | || || | ||| |||| ||| || Sbjct 236562 ACCTCCTTGATCAACATAACGAGCAGTATCATTGAACACCCTTAGCATGGGAACAATACC 236621 Query 76813 GTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGA 76872 || ||||| |||||||| ||| ||||||||||| |||||| || || || ||| Sbjct 236622 ATTGGATGTTCCATTTGTACCACGGATATAACTTCCTGTTGCACGGATGTTGTGAACAGA 236681 Query 76873 TAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGAT 76932 | ||| |||||||| || || |||| |||||| |||| || ||||| || Sbjct 236682 AACGCCAATTCCTCCAGCTGACTTGCTTATTATAGCACACTCCTTCAGAGTATCATATAT 236741 Query 76933 GCCCTCTATACTATCATCCATCATG 76957 ||||| || ||||| || ||||| Sbjct 236742 TCCCTCAATGCTATCTTCTTTCATG 236766 Score = 95.1 bits (104), Expect = 2e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 || |||||||| ||||| || || || |||||||||||||| | ||| | |||| | Sbjct 236888 GTGCCTGCATTGAACAAGGTGGGTGAAGCATGAGTGAACCACCGCTGAGACAACAGATGG 236947 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 |||||| |||| || | || || || || || ||||| ||||| || | ||||||| Sbjct 236948 TATGTTCCAATGACAGAGTCAATGTCATCTTTGTGGATTCCAACAGCTACTCTCATCAAC 237007 Query 77114 ATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAA 77173 || || || || | || || ||| | | ||| || | || || | || | | Sbjct 237008 ATGTGTTGTGGCCTCTCCACTACCTTGCCACAAACTTTTAAGAGATACGACCTCTCAAGA 237067 Query 77174 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 |||||||| |||||||| | || |||||||| || ||||| || Sbjct 237068 GTTTTAAATCCAAAATAATCATAGTCAAAGTCTCGATCATAAATTAT 237114 >seq125 Length=520858 Score = 100 bits (110), Expect = 4e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 46630 CATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGC 46689 || || || || ||||||||||| || || | || | ||||| || || |||||| Sbjct 302538 CAAGCGAAGTCGCAATGAAGGCCCTCGTCACGGGAGATAAGCTCGTTCGAGAAGGTGAGC 302597 Query 46690 CCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAAT 46749 || ||||| || || ||||| ||||||||||| ||||| ||| || ||||| ||||| Sbjct 302598 CCCGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATAGCGCAGAAGGAGCCAGAGAAGAAG 302657 Query 46750 ATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTC 46784 || || || ||| ||||| ||||||| || ||| Sbjct 302658 ATTCCCTCGACACAGGCGAAGGCGACAATTCGCTC 302692 >seq1475 Length=72375 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 || |||||||||||||| || ||||| |||||||||||||| | ||| | |||| | Sbjct 28159 GTGCCTGCATTAAACAAGGTGGGAGAAGCATGAGTGAACCACCGCTGAGACATCAGATGG 28100 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 || ||| ||||| | | || || || || ||||| ||||| || | ||||| | Sbjct 28099 TAAGTTCTGATAACAGACTTGATGTCATCTTTGTGGATTCCAACAGCTACTCTCATCAGC 28040 Query 77114 ATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAA 77173 || || || || | || || ||| | || |||||| | ||||| | |||| | Sbjct 28039 ATGTGTTGTGGCCTCTCAACTACCTTGCCAGATACTTTCAAGAGATATGACCTCTCCAGA 27980 Query 77174 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 |||||||| ||||| |||| || ||| |||| || ||||| || Sbjct 27979 GTTTTAAATCCAAAGTAGTCATAGTCAAAATCTCGATCATAAATTAT 27933 Score = 87.8 bits (96), Expect = 3e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 76520 TCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGAC 76579 ||||||||||| |||||| |||| | | || ||| |||||| || || | ||||||| Sbjct 29783 TCAAATTCATCACCCCAACAATCAGCAAGTCCCGGAGCTTCATTAGGGCAAAACAATGAC 29724 Query 76580 CACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAAT 76639 || | |||| || ||| | || ||||||||||||||| ||||| || ||| ||| Sbjct 29723 CATTGTCCATTACTCTGAACTCTTTCCATAAAGAGATCAGGAATCCAAAGGGCATAAAAC 29664 Query 76640 AGATCTCGGGTTCTACGTTCTTC 76662 || || | | |||| | ||||| Sbjct 29663 AGGTCCCTAGCTCTATGCTCTTC 29641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712681174612800