Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Musa_20itinerans_20[genbank_20GCA_5F001649415.1_202016-05-21] 28,415 sequences; 455,349,267 total letters Query= NC_031761.1 Length=131855 Score E Sequences producing significant alignments: (Bits) Value seq1530 89.7 4e-13 seq299 84.2 2e-11 >seq1530 Length=69702 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 111099 AATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111158 |||||||||||| || || || | |||||||| ||||| ||| | || ||| | Sbjct 25180 AATGCAAATTTTCGTTAAGACTCTCACCGGCAAGACCATCACCCTTGAGGTTGAATCTTC 25121 Query 111159 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111218 |||| || ||| | || ||| |||||| |||||||| || ||||| | ||||| Sbjct 25120 CGATACTATTGATAATGTGAAAGCTAAAATTCAAGACAAAGAGGGTATTCCCCTAGATCA 25061 Query 111219 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111278 |||||| | || | ||| || |||||||| || ||| | || | || || || || Sbjct 25060 GCAAAGGTTGATCTTTGCTGGGAAACAATTAGAGGATGGTCGCACCCTAGCGGACTACAA 25001 Query 111279 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGC 111327 || || || || || || || || | ||| | || || || |||||| Sbjct 25000 CATCCAGAAGGAGTCCACCCTCCACCTGGTGCTCCGCCTTCGTGGTGGC 24952 >seq299 Length=319228 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 |||||||| ||||||||||| | ||||| || ||||| ||| | || ||| || Sbjct 260807 ATGCAAATCTTTGTCAAAACTCTCACCGGAAAGACCATCACCCTTGAGGTTGAATCCTCT 260866 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || | ||| | | || || || || ||||| |||||| ||||| ||||| Sbjct 260867 GACACCATTGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCGGATCAG 260926 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 |||||||| || | || |||||||| | || ||| || ||||||| || ||| Sbjct 260927 CAAAGGCTCATCTTCGCTGGCAAACAGCTCGAGGATGGCCGCACCTTGGCCGACTACAAT 260986 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111328 || || || || || || || || | ||| | ||||| || ||||||| Sbjct 260987 ATCCAGAAGGAGTCCACCCTCCACCTTGTGCTCCGTCTCCGTGGTGGCA 261035 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| |||||||||||||| | ||||| || ||||| ||| | || ||| || Sbjct 261035 ATGCAGATTTTTGTCAAAACTCTCACCGGAAAGACCATCACCCTTGAGGTTGAATCCTCT 261094 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || || | | | | || || || || ||||| |||||| ||||| ||||| Sbjct 261095 GACACTATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCGGATCAG 261154 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 |||||||| || | || |||||||| | || ||| || ||||||| || ||| Sbjct 261155 CAAAGGCTCATCTTCGCTGGCAAACAGCTCGAGGATGGCCGCACCTTGGCCGACTACAAT 261214 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111328 || || || || || || || || | ||| | ||||| || ||||||| Sbjct 261215 ATCCAGAAGGAGTCCACCCTCCACCTTGTGCTCCGTCTCCGTGGTGGCA 261263 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 |||||||||||||| ||||| | || || || ||||| || |||| || | Sbjct 262175 ATGCAAATTTTTGTGAAAACCCTCACTGGGAAGACCATCACTCTGGAGGTTGAGAGCTCG 262234 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || | | | | | || || ||| || ||||| |||||| |||| || || Sbjct 262235 GACACCATCGACAATGTGAAGGCAAAGATACAGGACAAGGAAGGCATTCCTCCAGACCAG 262294 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 ||||||||||| | ||| ||||| |||||||| ||| || |||| || ||||| Sbjct 262295 CAAAGGCTTATCTTTGCTGGCAAGCAATTGGAGGATGGCCGCACCTTGGCTGACTATAAC 262354 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111328 || || || |||||||| || || | ||| | ||||| || ||||||| Sbjct 262355 ATCCAGAAGGAATCTACCCTCCACCTTGTGCTCCGTCTCCGTGGTGGCA 262403 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421665123486040