Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oropetium_20thomaeum_20[genbank_20GCA_5F001182835.1_202015-07-20] 625 sequences; 243,174,629 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq5 149 7e-31 seq165 122 1e-22 seq4 122 1e-22 seq24 113 5e-20 seq49 107 2e-18 seq17 105 8e-18 seq57 100 3e-16 seq172 82.4 9e-11 seq63 82.4 9e-11 seq20 82.4 9e-11 >seq5 Length=5556497 Score = 149 bits (164), Expect = 7e-31 Identities = 150/195 (77%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || |||||||| ||||| || ||| |||| || |||||||| || ||||| Sbjct 4050126 CTCCTTCTGGATGTTGTAATCGGCCAGCGTGCGCCCGTCCTCCAGCTGCTTCCCGGCGAA 4050067 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| ||||||||||| | ||| |||| |||||||||| | || || | | Sbjct 4050066 GATGAGCCGCTGCTGGTCCGGCGGGACGCCCTCCTTGTCCTGCACCTTGGCCTTCACGTT 4050007 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 |||||||||||| || ||||| || | |||||| || |||||||| |||||||| || Sbjct 4050006 CGCCACCGTGTCCGACGGCTCCACCTCCAGCGTGATCGTCTTGCCCGTCAGCGTCTTCAC 4049947 Query 43172 AAAGATTTGCATTTT 43186 ||||| ||||| || Sbjct 4049946 GAAGATCTGCATCTT 4049932 >seq165 Length=58862 Score = 122 bits (134), Expect = 1e-22 Identities = 157/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 ||||| ||| | ||| |||||| || || ||||| || || || || || | || || Sbjct 23343 CACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCATCCTC 23402 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 |||||||| || ||||| ||||| ||||||||||| | ||| | || |||||||||| Sbjct 23403 GAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTG 23462 Query 43094 GATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTT 43152 ||| || || | ||| | | | ||||| || ||||| || | ||||||||| | Sbjct 23463 GATCTTGGCCTTCA-CGTTGTCGATGGTGTCCGAGGACTCCACCTCCAGCGTGATGGTCT 23521 Query 43153 TGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 ||||||| || ||||| || ||||| ||||| || Sbjct 23522 TGCCCGTCAGGGTCTTCACGAAGATCTGCATCTT 23555 >seq4 Length=5694366 Score = 122 bits (134), Expect = 1e-22 Identities = 157/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 ||||| ||| | ||| |||||| || || ||||| || || || || || | || || Sbjct 3329474 CACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCATCCTC 3329415 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 |||||||| || ||||| ||||| ||||||||||| | ||| | || |||||||||| Sbjct 3329414 GAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTG 3329355 Query 43094 GATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTT 43152 ||| || || | ||| | | | ||||| || ||||| || | ||||||||| | Sbjct 3329354 GATCTTGGCCTTCA-CGTTGTCGATGGTGTCCGAGGACTCCACCTCCAGCGTGATGGTCT 3329296 Query 43153 TGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 ||||||| || ||||| || ||||| ||||| || Sbjct 3329295 TGCCCGTCAGGGTCTTCACGAAGATCTGCATCTT 3329262 >seq24 Length=2721981 Score = 113 bits (124), Expect = 5e-20 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| | | ||| | ||||| || | ||| ||||| || |||||||| ||||| Sbjct 300581 CCTCCGCGGAGACGGAGCACCAGGTGAAGCGTGGATTCCTTCTGGATATTGTAGTCAGCG 300522 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || || | || || |||||||| || ||||| ||||| ||||||||||| | || Sbjct 300521 AGGGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATGAGGCGCTGCTGGTCCGGTGGG 300462 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 43135 | || |||||||||| ||| || || | ||| | | | ||||| || ||||| Sbjct 300461 ATGCCCTCCTTGTCCTGGATCTTAGCCTTTA-CGTTGTCGATGGTGTCCGAGGACTCCAC 300403 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 || | ||||||||| || ||||| | ||||| || ||||| ||||| || Sbjct 300402 CTCCAACGTGATGGTCTTCCCCGTCAAGGTCTTCACGAAGATCTGCATCTT 300352 >seq49 Length=1823295 Score = 107 bits (118), Expect = 2e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 ||||| || | ||| |||||| || || ||||| ||||| || || || |||| || Sbjct 157912 CACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTGCGGCCGTCCTC 157971 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 |||||||| || ||||| ||||| ||||||||||| | || | || |||||||||| | Sbjct 157972 AAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCC-T 158030 Query 43094 GATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTT 43152 || | || | || | | | | ||||| || ||||| || | |||||||| | Sbjct 158031 GAATCTTGGCCTTCACATTGTCGATGGTGTCCGAGGACTCCACCTCAAGAGTGATGGTCT 158090 Query 43153 TGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||| || || ||||| || ||||| ||||| Sbjct 158091 TGCCAGTAAGGGTCTTGACGAAGATCTGCAT 158121 Score = 107 bits (118), Expect = 2e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 ||||| || | ||| |||||| || || ||||| || || || || || |||| || Sbjct 158140 CACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGGCCGTCCTC 158199 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 |||||||| |||||||| ||||| ||||||||||| | || | || |||||||||| Sbjct 158200 GAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTG 158259 Query 43094 GATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTT 43152 ||| || || | ||| | | | || || || ||||| |||| || ||||| | Sbjct 158260 GATCTTGGCCTTCA-CGTTGTCAATGGTATCCGAGGACTCCACCTCGAGGGTTATGGTCT 158318 Query 43153 TGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||| || || ||||| || ||||| ||||| Sbjct 158319 TGCCGGTAAGGGTCTTAACGAAGATCTGCAT 158349 Score = 102 bits (112), Expect = 9e-17 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| ||||| || || || |||| || |||||||| ||||| || Sbjct 157475 CTCCTTCTGGATGTTGTAGTCAGCGAGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCAAA 157534 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| ||||||||||| | || | || |||||||||| ||| || || | ||| Sbjct 157535 GATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCA-CGT 157593 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | |||||| || || || || | || || || || || || || ||||| | Sbjct 157594 TGTCGATGGTGTCGGAGGACTCAACCTCCAGGGTAATAGTCTTCCCAGTGAGGGTCTTGA 157653 Query 43171 CAAAGATTTGCAT 43183 ||||||| ||||| Sbjct 157654 CAAAGATCTGCAT 157666 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/193 (73%), Gaps = 3/193 (2%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| ||||| || || || | || || |||||||| || ||||| Sbjct 157703 CTCCTTCTGGATGTTGTAGTCAGCGAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAA 157762 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| ||||||||||| | || | || |||||||||| ||| | || | | ||| Sbjct 157763 GATGAGACGCTGCTGGTCCG-GGGGATGCCCTCCTTGTCC-TGAATCTTGGCCTTCACGT 157820 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | ||||| || ||||| || | |||||||| ||||| || || ||||| | Sbjct 157821 TGTCGATGGTGTCCGAGGACTCCACCTCAAGGGTGATGGTCTTGCCAGTAAGGGTCTTGA 157880 Query 43171 CAAAGATTTGCAT 43183 | || || ||||| Sbjct 157881 CGAAAATCTGCAT 157893 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| ||||| ||||| || ||||| || || | || || |||||||| || || || Sbjct 157020 TCCTTCTGAATGTTGTAGTCCGCCAGGGTACGTCCATCCTCCAGCTGCTTGCCTGCAAAA 157079 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || || ||||||||||| | || | || |||||||||| ||| || || | | Sbjct 157080 ATCAGACGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTG 157139 Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | ||||| || || || || | ||||| || || || || || ||||| ||| Sbjct 157140 TCAATGGTGTCTGAAGACTCTACCTCCAAGGTGATAGTCTTCCCAGTGAGGGTCTTGACA 157199 Query 43173 AAGATTTGCAT 43183 ||||| ||||| Sbjct 157200 AAGATCTGCAT 157210 Score = 87.8 bits (96), Expect = 2e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| || || ||||| || || || || || | || || |||||||| ||||| || Sbjct 157248 TCCTTCTGGATGTTGTAGTCCGCAAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAG 157307 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 43111 ||||| ||||||||||| | || | || |||||||||| ||| | || | || | | Sbjct 157308 ATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCC-TGAATCTTGGCCTTCACATT 157366 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | ||||| || || || || | || ||||| ||||| || || ||||| || Sbjct 157367 GTCGATGGTGTCAGAGGACTCAACCTCCAAGGTAATGGTCTTGCCAGTGAGGGTCTTGAC 157426 Query 43172 AAAGATTTGCAT 43183 ||||| ||||| Sbjct 157427 GAAGATCTGCAT 157438 >seq17 Length=3182705 Score = 105 bits (116), Expect = 8e-18 Identities = 155/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| | ||||| ||| | ||| ||| || ||||| ||||||||||| || || || | Sbjct 3005726 ACGGAGCACCAGATGAAGGGTGGACTCTTTCTGAATGTTGTAATCAGCAAGGGTACGTCC 3005785 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || |||||||| |||||||| ||||| | ||||||||| | || | || |||||| Sbjct 3005786 ATCCTCGAGCTGCTTGCCAGCGAAGATGAGCCTCTGCTGGTCCGGGGGGATGCCCTCCTT 3005845 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146 ||| ||| || || | ||| | | | ||||| || || || || | |||| Sbjct 3005846 GTCTTGGATCTTGGCCTTCA-CGTTGTCGATGGTGTCAGATGACTCTACCTCAAGGGTGA 3005904 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||| || || || || ||||| || ||||| ||||| Sbjct 3005905 TGGTCTTCCCAGTGAGGGTCTTGACGAAGATCTGCAT 3005941 Score = 82.4 bits (90), Expect = 9e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| ||| || || ||| ||||||||| |||| |||||||||||||||| |||| Sbjct 3167346 AAAAAAGTTCGCCGTTGCCGGGGATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATAC 3167287 Query 60117 TCACCACTATACTAC 60131 ||||||||||||||| Sbjct 3167286 TCACCACTATACTAC 3167272 >seq57 Length=1649376 Score = 100 bits (110), Expect = 3e-16 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||||| | || | ||||| || | |||| ||||| || ||||||||||||||| Sbjct 1450332 CCTCCTCGAAGGCGAAGGACCAAGTGAAGTGTGGATTCCTTCTGGATATTGTAATCAGCC 1450273 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | || || | || || |||||||| ||||| ||||| || | ||||||||| | || Sbjct 1450272 AATGTGCGTCCATCCTCCAGCTGCTTTCCAGCAAATATAAGCCTCTGCTGGTCAGGTGGG 1450213 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 43133 | || |||||||| ||| ||| || | | | | ||||| |||| || Sbjct 1450212 ATGCCTTCCTTGTCTTGGATCTTTGCCTTCACATTATCAATGGTGTCAGAGCTC---TCA 1450156 Query 43134 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || | || ||||| || || || |||||||| |||||||| ||||| Sbjct 1450155 ACCTCAAGAGTTATGGTCTTTCCAGTGAGCGTCTTCACAAAGATCTGCAT 1450106 >seq172 Length=54932 Score = 82.4 bits (90), Expect = 9e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| ||| || || ||| ||||||||| |||| |||||||||||||||| |||| Sbjct 11068 AAAAAAGTTCGCCGTTGCCGGGGATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATAC 11127 Query 60117 TCACCACTATACTAC 60131 ||||||||||||||| Sbjct 11128 TCACCACTATACTAC 11142 >seq63 Length=1402730 Score = 82.4 bits (90), Expect = 9e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| ||| || || ||| ||||||||| |||| |||||||||||||||| |||| Sbjct 11699 AAAAAAGTTCGCCGTTGCCGGGGATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATAC 11640 Query 60117 TCACCACTATACTAC 60131 ||||||||||||||| Sbjct 11639 TCACCACTATACTAC 11625 >seq20 Length=3063688 Score = 82.4 bits (90), Expect = 9e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| || | || || ||| ||||||||| |||| |||||||||||||||| |||| Sbjct 177978 AAAAAGTTACGCCGTTGCCGGGGATCGAACCCGGGTCACCCGCGTGACAGGCGGGAATAC 177919 Query 60117 TCACCACTATACTAC 60131 ||||||||||||||| Sbjct 177918 TCACCACTATACTAC 177904 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571813132675000