Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oropetium_20thomaeum_20[genbank_20GCA_5F001182835.1_202015-07-20] 625 sequences; 243,174,629 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq23 156 4e-33 seq5 114 1e-20 seq49 107 2e-18 seq17 91.5 1e-13 seq8 89.7 5e-13 seq165 86.0 6e-12 seq57 86.0 6e-12 seq4 86.0 6e-12 >seq23 Length=2780208 Score = 156 bits (172), Expect = 4e-33 Identities = 395/594 (66%), Gaps = 10/594 (2%) Strand=Plus/Minus Query 57545 CATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTT 57604 |||||| ||||| | || || | || ||| | | ||||| ||||| | ||| || || Sbjct 1222530 CATGTTCCCGATCAAGTACCCGCAGATCTGGGAGTTTTACAAGAAGGCGGTAGCCTCCTT 1222471 Query 57605 TTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATTGGGATTCC---CTCAA 57661 ||||||| ||| || || ||||| ||| || | || | ||||| || ||||| Sbjct 1222470 CTGGACCGCCGAGGAGGTGGACCTCTCTGCCGACGCGCGCCACTGGGACGCCGCCCTCAA 1222411 Query 57662 AGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTAT 57721 ||| | |||| || |||||| |||| || |||||||| ||||| || || Sbjct 1222410 CCCCGACGAGCGCCATTTCATCTCCCACGTGCTGGCCTTCTTCGCCGCCTCCGACGGCAT 1222351 Query 57722 TGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATG 57781 || ||||| | | | || || || || || | |||||| | Sbjct 1222350 CGTGCTGGAGAACCTCGCGTCCCGCTTCATGTCGGACGTCCAGGTCGCCGAGGCGCGCGC 1222291 Query 57782 CTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCAT 57841 ||||||||| || || | ||||| || ||| | || || || ||||| ||||| || | Sbjct 1222290 CTTTTACGGGTTCCAGATCGCCATCGAGAACATCCACTCGGAGATGTACTCGCTGCTGCT 1222231 Query 57842 CGATACGTACGTGAAGGACAACGACGAGAAACGTAGACTGTTCAACGCGATCGAAACAAT 57901 || |||||| | ||| || ||||| | |||||| ||| ||||| || | Sbjct 1222230 GGAGACGTACATCCGCGACGGCGCGGAGAAGGACCGCCTGTTCCGCGCCATCGAGACGGT 1222171 Query 57902 GCCCGCGAT-CGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCA 57960 ||||| | |||| ||||| |||||| | || ||||| | ||| | | | Sbjct 1222170 TCCCGCCGTGCGCCGC-AAGGCCGAGTGGGCCATGCGCTGGATCGACGGCGGCGAGCGC- 1222113 Query 57961 CGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCT 58020 ||||| ||| | || ||||||||||| |||||| || || ||||| |||||| || Sbjct 1222112 --TTCGCGGAGCGCCTCGTCGCGTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCCT 1222055 Query 58021 T-TGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAAC 58079 | |||| || | || ||| | ||||| |||||||| ||||| || || || || |||| Sbjct 1222054 TCTGCGCCA-TCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGACTCACCTTCTCCAAC 1221996 Query 58080 GAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTAC 58133 ||| | || |||||||||||||| || || || || || |||||| | ||| Sbjct 1221995 GAGCTCATCTCGCGCGACGAGGGCCTGCACTGCGACTTCGCCTGCCTACTCTAC 1221942 >seq5 Length=5556497 Score = 114 bits (126), Expect = 1e-20 Identities = 162/225 (72%), Gaps = 12/225 (5%) Strand=Plus/Plus Query 31186 ATCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGA 31245 ||| || ||||| || ||||| ||||| ||||| ||||| |||||||| | || || || Sbjct 4049928 ATCGAAGATGCAGATCTTCGTGAAGACGCTGACGGGCAAGACGATCACGCTGGAGGTGGA 4049987 Query 31246 ACCGTCCGACA--GTGTCGAA----ACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGT 31299 ||||| |||| ||| |||| | || ||| | | | ||||||||| ||||| Sbjct 4049988 GCCGTCGGACACGGTGGCGAACGTGAAGGCCAAG--GTGCA----GGACAAGGAGGGCGT 4050041 Query 31300 GCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTAT 31359 ||||| ||||||||||| || || ||||| || || ||| |||| ||| || | Sbjct 4050042 CCCGCCGGACCAGCAGCGGCTCATCTTCGCCGGGAAGCAGCTGGAGGACGGGCGCACGCT 4050101 Query 31360 GAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 | |||||| ||||| || || || ||||| || || ||||| || Sbjct 4050102 GGCCGATTACAACATCCAGAAGGAGTCGACGCTGCACCTGGTCCT 4050146 >seq49 Length=1823295 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || || ||||| || || ||| | || ||||| | || Sbjct 157438 ATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACCATTACCTTGGAGGTTGAGTCCTCT 157379 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || || | || ||||||||| ||| | || || |||||| Sbjct 157378 GACACCATCGACAATGTGAAGGCCAAGATTCAGGACAAGGAGGGCATCCCCCCGGACCAG 157319 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || || |||||||| ||| | || || || | || || ||| Sbjct 157318 CAGCGTCTCATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTTGCGGACTACAAC 157259 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || || ||||| |||||||| || || ||||| |||||||| |||| Sbjct 157258 ATCCAGAAGGAATCCACTCTTCACCTTGTGCTTAGGCTGAGGGGTGGTA 157210 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||| || || || || || || ||| | || ||||| | || Sbjct 157667 CATGCAGATCTTTGTCAAGACCCTCACTGGGAAGACTATTACCCTGGAGGTTGAGTCCTC 157608 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| |||| | || || | || ||||||||| ||| | || || ||||| Sbjct 157607 CGACACCATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCA 157548 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| || || |||||||| ||| | || ||| || | || || || Sbjct 157547 GCAGCGTCTCATCTTTGCTGGCAAGCAGCTTGAGGACGGCCGCACCCTCGCTGACTACAA 157488 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||| || || || || || ||||| ||||| || || |||||||| |||| Sbjct 157487 CATCCAGAAGGAGTCCACCCTTCACCTGGTCCTGAGGCTGAGGGGTGGTA 157438 Score = 98.7 bits (108), Expect = 9e-16 Identities = 105/136 (77%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 31285 GGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGA 31344 ||||||||| ||| | || || |||||||| | || || |||||||| || || ||||| Sbjct 1214350 GGACAAGGAGGGCATCCCCCCAGACCAGCAAAGGCTGATTTTCGCTGGTAAGCAATTGGA 1214291 Query 31345 AGACTCTATGACTATGAGC-GATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTAC 31403 ||| | || || ||| ||||| |||||||| ||||| ||||| ||||||||||| | Sbjct 1214290 AGATGGGAGAAC-ATTAGCTGATTACAACATTCAGAAAGAGTCGACACTTCATCTGGTCC 1214232 Query 31404 TTAGACTGAGGGGCGG 31419 | || || ||||| || Sbjct 1214231 TAAGGCTCAGGGGTGG 1214216 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| || || || || || |||||| | || || || | || Sbjct 157210 ATGCAGATCTTTGTCAAGACCCTCACTGGGAAGACTATCACCTTGGAGGTAGAGTCTTCA 157151 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || || || || ||||||||| ||| | || || |||||| Sbjct 157150 GACACCATTGACAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCACCGGACCAG 157091 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371 |||||||| || || || ||||| ||| |||| || | | | || || || || || Sbjct 157090 CAGCGTCTGATTTTTGCAGGCAAGCAGCTGGAGGA-TGGACGTACCCTGGCGGACTACAA 157032 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 |||||| || ||||| |||||||| ||||| ||| Sbjct 157031 CATTCAGAAGGAATCCACTCTTCACCTGGTGCTT 156998 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || || ||||| || || ||| |||| || || | || Sbjct 158349 ATGCAGATCTTCGTTAAGACCCTTACCGGCAAGACCATAACCCTCGAGGTGGAGTCCTCG 158290 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | || | || || | || ||||||||| ||| | || || |||||| Sbjct 158289 GATACCATTGACAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 158230 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || ||||||||||| ||| | || ||| || | ||| || ||| Sbjct 158229 CAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACCCTTGCCGACTACAAC 158170 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || || || || || || || ||||| || || || ||||| |||| Sbjct 158169 ATCCAGAAGGAGTCCACCCTCCACCTGGTGCTCAGGCTCAGGGGTGGTA 158121 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || || ||||| || ||||| | || || || | || Sbjct 158121 ATGCAGATCTTCGTCAAGACCCTTACTGGCAAGACCATCACTCTTGAGGTGGAGTCCTCG 158062 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || || | || ||||||||| ||| | || || |||||| Sbjct 158061 GACACCATCGACAATGTGAAGGCCAAGATTCAGGACAAGGAGGGCATCCCCCCGGACCAG 158002 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || ||||| ||||| ||| | || ||| || | || || ||| Sbjct 158001 CAGCGTCTCATCTTCGCCGGCAAGCAGCTTGAGGACGGCCGCACCCTCGCTGACTACAAC 157942 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || || || || || || || ||||| || || || ||||| |||| Sbjct 157941 ATCCAGAAGGAGTCCACCCTCCACCTGGTGCTCAGGCTCAGGGGTGGTA 157893 Score = 82.4 bits (90), Expect = 7e-11 Identities = 112/155 (72%), Gaps = 1/155 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| ||||| || || ||||| || |||||| | || || || | || Sbjct 157893 ATGCAGATTTTCGTCAAGACCCTTACTGGCAAGACCATCACCCTTGAGGTGGAGTCCTCG 157834 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || || | || ||||||||| ||| | || || |||||| Sbjct 157833 GACACCATCGACAACGTGAAGGCCAAGATTCAGGACAAGGAGGGCATCCC-CCGGACCAG 157775 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||||||| || ||||| ||||| ||| | || || Sbjct 157774 CAGCGTCTCATCTTCGCCGGCAAGCAGCTTGAGGA 157740 >seq17 Length=3182705 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| || || || || || |||||| | || || || | || Sbjct 3005942 CATGCAGATCTTCGTCAAGACCCTCACTGGGAAGACCATCACCCTTGAGGTAGAGTCATC 3005883 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | || || | || |||||||| ||| | || || ||||| Sbjct 3005882 TGACACCATCGACAACGTGAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCGGACCA 3005823 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATA 31370 |||| | || || ||||||||||| ||| | || || | | | || | ||||| | Sbjct 3005822 GCAGAGGCTCATCTTCGCTGGCAAGCAGCTCGAGGA-TGGACGTACCCTTGCTGATTACA 3005764 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||||| ||||| || || ||||||||||| || Sbjct 3005763 ACATTCAGAAAGAGTCCACCCTTCATCTGGTGCT 3005730 >seq8 Length=4429347 Score = 89.7 bits (98), Expect = 5e-13 Identities = 103/136 (76%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 31285 GGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGA 31344 ||| |||||||| | || || || ||||||||||| ||||| |||||||| ||| |||| Sbjct 3702253 GGATAAGGAAGGGATTCCTCCGGATCAGCAGCGTCTGATATTTGCTGGCAAGCAGCTGGA 3702312 Query 31345 AGACTCTATG-ACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTAC 31403 || | | | || || || || |||||||| || |||||||||||||| |||| | Sbjct 3702313 GGA-TGGACGCACGCTGGCTGACTACAACATTCAGAAGGAATCGACTCTTCACTTGGTCC 3702371 Query 31404 TTAGACTGAGGGGCGG 31419 | || || ||||| || Sbjct 3702372 TCAGGCTCAGGGGTGG 3702387 >seq165 Length=58862 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || ||||| ||||| ||||| ||||| || ||||| | || || || | Sbjct 23555 AAGATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACGCTGGAGGTGGAGTCC 23496 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || |||| |||| | || || | || ||||||||| ||| | ||||| ||| Sbjct 23495 TCGGACACCATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGGAC 23436 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 |||||||| || || ||||| ||||| ||| | || || || | ||| || Sbjct 23435 CAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTCGCCGACTAC 23376 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || || || || || || |||||||| || Sbjct 23375 AACATCCAGAAGGAGTCCACCCTCCATCTGGTGCT 23341 >seq57 Length=1649376 Score = 86.0 bits (94), Expect = 6e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||| || |||||||| || ||||| | || ||||| || Sbjct 1449649 CATGCAGATCTTTGTTAAGACCCTTACAGGCAAGACAATCACTTTGGAGGTTGAGAGCTC 1449708 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | || || | || ||||||||||||| | || || ||||| Sbjct 1449709 TGACACAATTGACAATGTTAAGGCCAAGATCCAGGACAAGGAAGGCATCCCTCCGGACCA 1449768 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGC-GATTATA 31370 |||| | || || || ||||| || ||| | ||||| || | ||| || || | Sbjct 1449769 GCAGAGGCTCATCTTTGCTGGGAAGCAGCTCGAAGATGGCCGTACCCT-AGCTGACTACA 1449827 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 |||| || || || ||||| || || || ||||| | |||||||| |||| Sbjct 1449828 ACATACAGAAGGAGTCGACCCTCCACCTTGTACTGCGTCTGAGGGGTGGTA 1449878 >seq4 Length=5694366 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || ||||| ||||| ||||| ||||| || ||||| | || || || | Sbjct 3329262 AAGATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACGCTGGAGGTGGAGTCC 3329321 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || |||| |||| | || || | || ||||||||| ||| | ||||| ||| Sbjct 3329322 TCGGACACCATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGGAC 3329381 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 |||||||| || || ||||| ||||| ||| | || || || | ||| || Sbjct 3329382 CAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTCGCCGACTAC 3329441 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || || || || || || |||||||| || Sbjct 3329442 AACATCCAGAAGGAGTCCACCCTCCATCTGGTGCT 3329476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445762917450000