Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oropetium_20thomaeum_20[genbank_20GCA_5F001182835.1_202015-07-20] 625 sequences; 243,174,629 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq46 84.2 3e-11 seq12 84.2 3e-11 >seq46 Length=1857289 Score = 84.2 bits (92), Expect = 3e-11 Identities = 151/221 (68%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 66216 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 66275 || || ||||| | || | ||| || | ||| | || | ||||| |||| ||| ||| Sbjct 1671531 CCACCTTGATCAACATAACGAGCAGTATCATTGAAGACACGTAACATAGGAACAATCCCA 1671472 Query 66276 TTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGAT 66335 || || || ||||| || || |||||||| ||| | || || ||||| || || Sbjct 1671471 TTTGAGGTTCCATTTGTTCCCCTAATATAGCTACCAGTAGCTCGGATATTGTGAACAGAG 1671412 Query 66336 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 66395 | ||| ||||||||||| || || | || ||| || | ||||||||||| Sbjct 1671411 ACACCAATTCCCCCTGCAGACTTGCTTATGACAGCACATTCCTTCAGAGTATCATAGATT 1671352 Query 66396 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 66436 ||||| || || ||||| ||||| || || |||||||| Sbjct 1671351 CCCTCAATGCTGTCATCTTTCATGCAAATAAGGAAACAGCT 1671311 >seq12 Length=3772834 Score = 84.2 bits (92), Expect = 3e-11 Identities = 156/226 (69%), Gaps = 6/226 (3%) Strand=Plus/Minus Query 66215 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 66274 ||| || ||||| | || | || || | ||| |||| | | ||| |||| || || Sbjct 2780919 TCCACCTTGATCAACATAACGTGCAGTATCATTGAAAACACGTAGCATAGGAACAAGTCC 2780860 Query 66275 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGA 66334 || || || ||||| || || |||||| |||||| | || ||||||||| |||||| Sbjct 2780859 GTTAGAAGTCCCATTAGTTCCTCGGATATAACTTCCAGTAGCTCGAATATTATGAATTGA 2780800 Query 66335 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGC-GCATCGTTTTAACG--TATCATA 66391 | ||| ||||| || || |||| | ||| || ||| | || | ||||||| Sbjct 2780799 GATACCGATTCCTCCAGCAGTTTT---GCTTATCGCAGCACATTCCGAAAGAGTATCATA 2780743 Query 66392 GATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 66437 || ||||| ||||||||||| ||||| | || ||||||||| Sbjct 2780742 AATTCCCTCAATACTATCATCTTTCATGCAGATAAGGAAACAGCTA 2780697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658167658025000