Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oropetium_20thomaeum_20[genbank_20GCA_5F001182835.1_202015-07-20] 625 sequences; 243,174,629 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq8 96.9 3e-15 seq5 95.1 1e-14 seq57 91.5 1e-13 seq49 86.0 6e-12 >seq8 Length=4429347 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 |||||| || | || | || | ||| | ||| ||||| || || | ||| || ||| Sbjct 2522491 GCCGCCGCGGAGGCGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGACGTTGTAGTCGGC 2522432 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || |||| | ||| || ||||| || || ||| ||||||| || ||||| || || || Sbjct 2522431 CAGCGTGCGCTCGTCCTCCAGCTGCTTCCCGGCAAAGATCAGGCGCTGCTGCTCCGGCGG 2522372 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || | ||| ||||| ||| ||| || | | | || || ||| || ||| || Sbjct 2522371 GATACTTTCCTTGTCCTGGATCTTTGCCTTGACATTGGCGACGGTATCGCCGGTCTCGAC 2522312 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | ||||||||||| ||| ||| ||| || ||||| || ||||| Sbjct 2522311 CTCGAGCGTCACCGTCTTTCCGATCAGCGTCTTCACGAAGATCTGCAT 2522264 >seq5 Length=5556497 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 |||||| || | || | || | ||| | ||| ||||| || || ||||| |||||| Sbjct 4050162 GCCGCCGCGGAGGCGGAGGACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCGGC 4050103 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || |||| | ||| || ||||| || || || |||| || || ||||| || || || Sbjct 4050102 CAGCGTGCGCCCGTCCTCCAGCTGCTTCCCGGCGAAGATGAGCCGCTGCTGGTCCGGCGG 4050043 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTC--CACTGTGTCGGTGGGCTCC 139714 | ||| || ||||| || || | || | |||| ||| ||||| | |||||| Sbjct 4050042 GACGCCCTCCTTGTCC-TGCACCTTGGCCTTCAC-GTTCGCCACCGTGTCCGACGGCTCC 4049985 Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| | || | ||||||||| |||| ||| || ||||| || ||||| Sbjct 4049984 ACCTCCAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 4049935 >seq57 Length=1649376 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| || || || || || ||||| ||||| || || | | || || ||||| Sbjct 1450764 TGAAGAGTGGATTCCTTCTGGATGTTGTAATCTGCCAAGGTACGCCCATCCTCCAGCTGC 1450705 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 || |||||| | || || | |||||||| ||||| || || || ||||| ||| || Sbjct 1450704 TTCCCAGCAAATATAAGCCTCTGCTGATCTGGAGGAATTCCCTCCTTGTCCTGGATCTTC 1450645 Query 139682 TGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741 || | | || | ||||||| | ||||||||||| || | |||||||| ||| Sbjct 1450644 GCCTTCACGTTATCTATGGTGTCGGAGCTCTCCACCTCAAGCGTGATGGTCTTGCCAGTC 1450585 Query 139742 AACGTTTTTACGAATATTTGCAT 139764 | |||||| || ||||||||||| Sbjct 1450584 AGCGTTTTGACAAATATTTGCAT 1450562 >seq49 Length=1823295 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || ||||| || ||| | |||| ||| |||||||| || ||| Sbjct 158153 GTGGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCA 158212 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||| ||||| ||||| || || || ||||| || ||||| ||| || || Sbjct 158213 GCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTC 158272 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | || || | || ||||||||| | ||| | ||||||||||| | || Sbjct 158273 ACGTTGTCAATGGTATCCGAGGACTCCACCTCGAGGGTTATGGTCTTGCCGGTAAGGGTC 158332 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 158333 TTAACGAAGATCTGCAT 158349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496060124500000