Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oropetium_20thomaeum_20[genbank_20GCA_5F001182835.1_202015-07-20] 625 sequences; 243,174,629 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq12 91.5 2e-13 seq46 89.7 7e-13 seq23 87.8 2e-12 >seq12 Length=3772834 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 72417 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 72476 ||| || || || || | ||| || ||||| || |||||||| | ||||| | | Sbjct 2780594 AGTGCCAGCGTTGAAAAGGGTTGGGGAAGCATGAGTAAACCAGCGCTGAGACATCATGTG 2780535 Query 72477 GTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAA 72536 ||| || | ||| ||||| ||||| | |||||| || || | || | |||||| Sbjct 2780534 GTATGTTCTGACAGCAGATTCAATATCATCCTTATGTATACCAACTGAAACCCTCATTAA 2780475 Query 72537 CATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAA 72596 |||||| || || ||||| || | | | | || |||||||| ||| || | || | Sbjct 2780474 CATATGTTGTGGCCTTTCCACAACCATTCCACCTACTTTCAACAGGTATGACCTCTCAAG 2780415 Query 72597 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 72644 || |||||||||||||| | ||| ||| ||||| || ||||| || Sbjct 2780414 TGTCTTAAAACCAAAATAATCGTAGTCAAAATCTCGATCATAAATTAT 2780367 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 71947 AACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGACCAC 72006 ||||| |||||||| || ||| || ||| |||||||||||| | || ||||||| Sbjct 2781396 AACTCTTCTCCCCAGCAATCAGCTAGACCTGGAGCTTCATTCGGACAAAACAGTGACCAC 2781337 Query 72007 TCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGA 72066 | ||||| ||||| | | ||| || |||||||||||||| ||||| ||| ||| Sbjct 2781336 TTTCCATTGAGCTTTACCCTCTCCATGAATAGATCAGGAATCCATAGAGCATAAAAAAGA 2781277 Query 72067 TCTCTGGTTCTATGCTCCTC 72086 ||||| | | ||||||||| Sbjct 2781276 TCTCTTGCACGATGCTCCTC 2781257 >seq46 Length=1857289 Score = 89.7 bits (98), Expect = 7e-13 Identities = 127/174 (73%), Gaps = 6/174 (3%) Strand=Plus/Minus Query 71916 TTCTCTTTCGTATTG--TGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAAT 71973 |||||| || |||| |||| | | || || ||||| || ||||| || | || Sbjct 1672229 TTCTCTCTCATATTTCTTGTACAAATTC--TCAAACTCTTCACCCCAGCAATCAGCCAAC 1672172 Query 71974 CCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATA 72033 || ||| ||||||||||||| | ||||||||| ||||||| || | || | || ||| Sbjct 1672171 CCTGGAGATTCATTCGGACAAAACAATGACCATTCTCCATTATTCTGGACCCTTTGCATG 1672112 Query 72034 AAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTC 72086 || |||||||||| ||| || || ||| || ||||| || | | ||||||||| Sbjct 1672111 AACAGATCAGGAACCCATAGTGC-ATAGAAAAGATCCCTTGCACGATGCTCCTC 1672059 Score = 84.2 bits (92), Expect = 3e-11 Identities = 151/221 (68%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 72178 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 72237 || || ||||| | || | ||| || | ||| | || | ||||| |||| ||| ||| Sbjct 1671531 CCACCTTGATCAACATAACGAGCAGTATCATTGAAGACACGTAACATAGGAACAATCCCA 1671472 Query 72238 TTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGAT 72297 || || | ||||| || || |||||||| ||| | || || |||||| || || Sbjct 1671471 TTTGAGGTTCCATTTGTTCCCCTAATATAGCTACCAGTAGCTCGGATATTGTGAACAGAG 1671412 Query 72298 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 72357 | ||| ||||||||||| || || | || ||| || | ||||||||||| Sbjct 1671411 ACACCAATTCCCCCTGCAGACTTGCTTATGACAGCACATTCCTTCAGAGTATCATAGATT 1671352 Query 72358 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 72398 ||||| || || ||||| ||||| || || |||||||| Sbjct 1671351 CCCTCAATGCTGTCATCTTTCATGCAAATAAGGAAACAGCT 1671311 >seq23 Length=2780208 Score = 87.8 bits (96), Expect = 2e-12 Identities = 100/132 (76%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || ||||| ||||||||||| ||||| || | || | |||||||| || |||||| Sbjct 1221952 CAGGCGAAGTCGCAGTGCAGGCCCTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGTGAGT 1222011 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCAGAAAAGAA 42183 || ||||| ||||| ||||| || ||||| || || | |||| || || || || ||||| Sbjct 1222012 CCCGGCATGAGGCCGCGCTTCTTGAGCCAGAAGAT-GGCGCAGAAGGAGCCCGAGAAGAA 1222070 Query 42184 GATTCCTTCTAC 42195 ||| || || || Sbjct 1222071 GATGCCCTCGAC 1222082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671133956725000