Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oropetium_20thomaeum_20[genbank_20GCA_5F001182835.1_202015-07-20] 625 sequences; 243,174,629 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq23 179 5e-40 >seq23 Length=2780208 Score = 179 bits (198), Expect = 5e-40 Identities = 408/597 (68%), Gaps = 19/597 (3%) Strand=Plus/Minus Query 124993 CCCTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCT 125052 || |||| || |||| ||| | | || ||||| | ||||| ||||| ||||||| Sbjct 1222531 CCATGTTCCCGATCAAGTACCCGCAGATCTGGGAGTTTTACAAGAAGGCGGTAGCCTCCT 1222472 Query 125053 TTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGA-GACTCGTTTG 125111 | ||||| | ||| ||||| || || || ||| | | | ||||| | | | | Sbjct 1222471 TCTGGACCGCCGAGGAGGTGGACCTCTCTGCCGACGCGCGCCACTGGGACGCCGCCCTCA 1222412 Query 125112 ACTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGA 125171 || || ||||| | || || || ||| | |||||||||| |||| |||||| || Sbjct 1222411 ACCCCGAC-GAGCGCCATTTCATCTCCCACGTGCTGGCCTTCTTCGCCGCCTCCGACGGC 1222353 Query 125172 ATCGTCAACGACAATCTGTTGACACGATTC-TCTCAAGAGTTGACCAT-TC-CAGAGGTG 125228 ||||| || || || | | || ||| | || || ||| || | |||| | Sbjct 1222352 ATCGTGCTGGAGAACCTCGCGTCCCGCTTCATGTCGGACGT---CCAGGTCGCCGAGGCG 1222296 Query 125229 TCGTGC-TTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTAC 125287 || || |||||||| ||||| ||| || |||||| | |||||||| |||||||| Sbjct 1222295 -CGCGCCTTTTACGGGTTCCAGATCGCCATCGAGAACATCCACTCGGAGATGTACTCGCT 1222237 Query 125288 ACTGATTGACATGTACATTCGCGATC-CGCAACGTAAACACATGCTCTTTAACGCAATCG 125346 ||| | || | |||||| ||||| ||| | || || || || ||| |||| Sbjct 1222236 GCTGCTGGAGACGTACATCCGCGACGGCGCGGAG-AAGGACCGCCTGTTCCGCGCCATCG 1222178 Query 125347 ACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACA 125406 | ||||| || | | || ||||| | |||| || || |||||||| | || | Sbjct 1222177 AGACGGTTCCCGCCGTGCGCCGCAAGGCCGAGTGGGCCATGCGCTGGATCGACGGCGGCG 1222118 Query 125407 AGT-CTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCG 125465 || ||||| | || | || || || |||||| ||| |||||||||||||| ||| Sbjct 1222117 AGCGCTTCG----CGGAGCGCCTCGTCGCGTTCGCCTGCGTCGAGGGCATCTTCTTCTCG 1222062 Query 125466 GG-TAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCA 125524 || | || |||| ||||||| ||||||||||||||||| |||||||| ||||| || Sbjct 1222061 GGCTCCTTCTGCG-CCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGACTCACCTT 1222003 Query 125525 CAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACT 125581 | |||||| | || || || ||||||||||| ||||| ||||| ||| ||||| Sbjct 1222002 CTCCAACGAGCTCATCTCGCGCGACGAGGGCCTGCACTGCGACTTCGCCTGCCTACT 1221946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741053410475000