Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oropetium_20thomaeum_20[genbank_20GCA_5F001182835.1_202015-07-20] 625 sequences; 243,174,629 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq57 82.4 6e-11 >seq57 Length=1649376 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||| | ||| | ||||||||||| || || |||||||| |||| ||| | | || || Sbjct 1449631 CACAAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAATCAGCCAATGTACGGCCATCTTC 1449572 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||||| || || ||| |||| || ||||||||||| ||| | |||||| || || Sbjct 1449571 TAGCTGCTTGCCAGCAAAAATGAGCCTCTGCTGATCTGGGGGGATGCCCTCCTTATCCTG 1449512 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 ||| || || || | | | |||||| || ||| || | || ||||| || Sbjct 1449511 AATCTTGGCCTTAACATTATCAATAGTATCCGAAGTCTCTACCTCAAGAGTGATGGTCTT 1449452 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || || || ||||| || || ||||| Sbjct 1449451 GCCAGTCAACGTCTTGACGAAGATCTGCAT 1449422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414569642121250