Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oropetium_20thomaeum_20[genbank_20GCA_5F001182835.1_202015-07-20] 625 sequences; 243,174,629 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq57 136 9e-27 seq49 127 5e-24 seq17 120 7e-22 >seq57 Length=1649376 Score = 136 bits (150), Expect = 9e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || || || | ||||| || ||||| || || || ||| Sbjct 1449651 ATGCCACCCCTCAGACGCAGCACAAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAATCA 1449592 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | | || | || |||||||| || || ||||||||||| |||||||| ||||| || Sbjct 1449591 GCCAATGTACGGCCATCTTCTAGCTGCTTGCCAGCAAAAATGAGCCTCTGCTGATCTGGG 1449532 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || || |||||||||||||| || || ||||| || | ||||| || ||| Sbjct 1449531 GGGATGCCCTCCTTATCCTGAATCTTGGCCTTAACATTATCAATAGTATCCGAAGTCTCT 1449472 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||| ||||| | || || || || |||||||| Sbjct 1449471 ACCTCAAGAGTGATGGTCTTGCCAGTCAACGTCTTGACGAAGATCTGCAT 1449422 Score = 131 bits (144), Expect = 4e-25 Identities = 169/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || |||| || | ||| || | || | ||| ||||| ||||| ||||| || ||| Sbjct 1450335 ATCCCTCCTCGAAGGCGAAGGACCAAGTGAAGTGTGGATTCCTTCTGGATATTGTAATCA 1450276 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | | || | || || || || || ||||||||||| || |||||||| || ||||| Sbjct 1450275 GCCAATGTGCGTCCATCCTCCAGCTGCTTTCCAGCAAATATAAGCCTCTGCTGGTCAGGT 1450216 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TC 104508 || || ||||| || || || |||||||| || ||||| || | ||| || || | || Sbjct 1450215 GGGATGCCTTCCTTGTCTTGGATCTTTGCCTTCACATTATCAATGGTGTC-AGAGCTCTC 1450157 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||| ||||| || || || ||||| |||||||| Sbjct 1450156 AACCTCAAGAGTTATGGTCTTTCCAGTGAGCGTCTTCACAAAGATCTGCAT 1450106 Score = 127 bits (140), Expect = 5e-24 Identities = 173/238 (73%), Gaps = 4/238 (2%) Strand=Plus/Minus Query 104325 TATTT--ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATT 104382 ||||| || || || || || | || || || || | || || || ||||| || || Sbjct 1450570 TATTTGCATCCCACCCCTAAGACGCAGGACAAGGTGCAGAGTGGACTCCTTCTGGATGTT 1450511 Query 104383 ATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTG 104442 ||||||| | || | || || || || || || |||||||| || |||||||| || Sbjct 1450510 GTAGTCAGCCAATGTGCGCCCATCCTCAAGCTGCTTCCCAGCAAAGATGAGCCTCTGCTG 1450451 Query 104443 ATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCT 104502 || || ||||| || || || ||||| ||||| || || ||||| |||| || || Sbjct 1450450 GTCCGGGGGTATACCCTCCTTGTCCTGGATCTTGGCCTTAACATTGTCTATCGTGTCAG- 1450392 Query 104503 AGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || | || |||||||| || |||||||| ||||| || || || |||||||||||||| Sbjct 1450391 AGCTCTCAACCTCTAGAGTGATAGTCTTCCCAGTGAGAGTCTTCACAAATATCTGCAT 1450334 >seq49 Length=1823295 Score = 127 bits (140), Expect = 5e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || ||||| || || || || | || || || ||||| || || |||||| Sbjct 157437 ATACCACCCCTCAGCCTCAGGACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCA 157496 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | || || | ||||| || || || || |||||||| || || | ||| || || || Sbjct 157497 GCGAGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCCGGG 157556 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || || || ||||| ||||| || || || || || | ||| ||| | || Sbjct 157557 GGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCGGAGGACTCA 157616 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || ||||||||||| ||||| || || || ||||| |||||||| Sbjct 157617 ACCTCCAGGGTAATAGTCTTCCCAGTGAGGGTCTTGACAAAGATCTGCAT 157666 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || |||||||| || || || | || ||||| ||||| || || ||||| Sbjct 157209 ATACCACCCCTCAGCCTAAGCACAAGGTGAAGAGTGGATTCCTTCTGGATGTTGTAGTCC 157268 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | || || | || || || || || || |||||||| || || | ||| || || || Sbjct 157269 GCAAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCCGGG 157328 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || || || ||||||||||| || || ||||| || | ||| || | || Sbjct 157329 GGGATGCCCTCCTTGTCCTGAATCTTGGCCTTCACATTGTCGATGGTGTCAGAGGACTCA 157388 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| | ||||| ||||| ||||| || || || || || |||||||| Sbjct 157389 ACCTCCAAGGTAATGGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 157438 Score = 116 bits (128), Expect = 9e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || ||||| || || || || | || || || ||||| || || |||||| Sbjct 157892 ATACCACCCCTGAGCCTGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCA 157951 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | || || | ||||| || || || || || || || || || | ||| || || || Sbjct 157952 GCGAGGGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGG 158011 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGG-TTC 104508 || || || || || ||||||||||| || || ||||| || | ||| || | ||| || Sbjct 158012 GGGATGCCCTCCTTGTCCTGAATCTTGGCCTTCACATTGTCGATGGTGTC-CGAGGACTC 158070 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||| |||||||| || || || || |||||||| Sbjct 158071 CACCTCAAGAGTGATGGTCTTGCCAGTAAGGGTCTTGACGAAGATCTGCAT 158121 Score = 109 bits (120), Expect = 1e-18 Identities = 165/231 (71%), Gaps = 3/231 (1%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| ||||| || || || || | || || || ||||| || || |||||| Sbjct 157665 ATGCCACCTCTCAGCCTCAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCA 157724 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | || || | || || || || || || || || || || || | ||| || || || Sbjct 157725 GCGAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGG 157784 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGG-TTC 104508 || || || || || ||||||||||| || || || || || | ||| || | ||| || Sbjct 157785 GG-ATGCCCTCCTTGTCCTGAATCTTGGCCTTCACGTTGTCGATGGTGTC-CGAGGACTC 157842 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||| |||||||| || || || || |||||||| Sbjct 157843 CACCTCAAGGGTGATGGTCTTGCCAGTAAGGGTCTTGACGAAAATCTGCAT 157893 Score = 102 bits (112), Expect = 2e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 104331 TTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAG 104390 |||| || || ||||| || || ||||| | ||| || ||||||||||| || || |||| Sbjct 1214214 TTCCACCCCTGAGCCTTAGGACCAGATGAAGTGTCGACTCTTTCTGAATGTTGTAATCAG 1214273 Query 104391 ATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAG 104450 || ||||| || ||||| | ||| || ||||| ||||| ||||| || || || || | Sbjct 1214274 CTAATGTTCTCCCATCTTCCAATTGCTTACCAGCGAAAATCAGCCTTTGCTGGTCTGGGG 1214333 Query 104451 GTATTCCTTCTTTATCCTGAA 104471 | || || || || ||||||| Sbjct 1214334 GGATGCCCTCCTTGTCCTGAA 1214354 >seq17 Length=3182705 Score = 120 bits (132), Expect = 7e-22 Identities = 156/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || ||||| || | ||||| || ||||| || || ||||| | ||||| | || || Sbjct 3005502 AGCACTAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCAAGAGTGCGGCCATCC 3005561 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || || ||||| || || |||||||| || || || || || || || || ||| Sbjct 3005562 TCCAGCTGCTTGCCAGCGAAGATGAGCCTCTGCTGGTCCGGGGGGATGCCCTCCTTGTCC 3005621 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGT 104526 || ||||||||||| || || || | ||| ||| || | || ||||| || || || || Sbjct 3005622 TGGATCTTTGCTTTCACGTTATCAATGGTGTCG-GAGCTCTCAACCTCCAGGGTGATGGT 3005680 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| ||||| | || || ||||| |||||||| Sbjct 3005681 CTTTCCAGTCAAGGTCTTCACAAAGATCTGCAT 3005713 Score = 109 bits (120), Expect = 1e-18 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || |||||||||| || || | || || || || || || ||| Sbjct 3114808 GTGGACTCCTTCTGGATGTTATAGTCAGCAAGGGTACGCCCATCCTCAAGCTGCTTGCCA 3114749 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 | || || |||||||| || || ||||| || || || || ||||||||||| || || Sbjct 3114748 GTGAAGATGAGCCTCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGAATCTTGGCCTTG 3114689 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| || | || ||||| || || || ||||| || || || || Sbjct 3114688 ACATTGTCGATGGTGTCAGAGGACTCCACCTCCAGGGTGATGGTCTTGCCGGTGAGGGTC 3114629 Query 104543 TTTACAAATATCTGCATT 104560 || || || ||||||||| Sbjct 3114628 TTGACGAAGATCTGCATT 3114611 Score = 107 bits (118), Expect = 4e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | || || ||||||||||| || || |||| || || | || || Sbjct 3005730 AGCACCAGATGAAGGGTGGACTCTTTCTGAATGTTGTAATCAGCAAGGGTACGTCCATCC 3005789 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || || ||||| || || |||||||| || || || || || || || || || Sbjct 3005790 TCGAGCTGCTTGCCAGCGAAGATGAGCCTCTGCTGGTCCGGGGGGATGCCCTCCTTGTCT 3005849 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 || ||||| || || || || || | ||| || | |||||||| || || || ||| Sbjct 3005850 TGGATCTTGGCCTTCACGTTGTCGATGGTGTCAGATGACTCTACCTCAAGGGTGATGGTC 3005909 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| || || || || || |||||||| Sbjct 3005910 TTCCCAGTGAGGGTCTTGACGAAGATCTGCAT 3005941 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151389179817500