Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oropetium_20thomaeum_20[genbank_20GCA_5F001182835.1_202015-07-20] 625 sequences; 243,174,629 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq11 125 6e-24 >seq11 Length=3891467 Score = 125 bits (138), Expect = 6e-24 Identities = 171/234 (73%), Gaps = 6/234 (3%) Strand=Plus/Plus Query 5503 GCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCTTC 5562 ||| ||||||||||| || || |||| | ||| ||| ||| | ||||||| | Sbjct 1795836 GCCGGTGGACCCGAACCCTCCCTCGCCGCGCAGGGTAACGTTGAGGTCCTCCACCTCCGC 1795895 Query 5563 CACATCGGGGAACGC-AGCGCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTTTA 5621 || ||||| || | | | |||| ||||| |||||| || |||||||| | ||| | Sbjct 1795896 GACCTCGGGCGTTGCGATCAC-CTCGATGATCATCTGCGCGATGCGGTCGCCGGGCTTGA 1795954 Query 5622 CCTCGAAATCGTTGTGGCCGAA--GTTGAACAGCACCACGCCCACGTTGCCGCGGTAGTC 5679 | |||| || || |||| |||||| || | || |||||| |||||||||||| Sbjct 1795955 CGGCGAAGTCCACGT--CCGAGTGGTTGAAGAGGATGACCCCCACGGGGCCGCGGTAGTC 1796012 Query 5680 GGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGA 5733 ||||| |||||||| ||||| ||||||||| ||||||| | ||||||||| || Sbjct 1796013 CGCGTCGATCACGCCGGCGCCTACGTCGATGGAGTGCTTCAGCGCCAGGCCAGA 1796066 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430051124195000