Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oropetium_20thomaeum_20[genbank_20GCA_5F001182835.1_202015-07-20] 625 sequences; 243,174,629 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq17 113 4e-20 seq8 102 7e-17 seq49 87.8 2e-12 seq1 84.2 2e-11 seq57 82.4 6e-11 seq5 82.4 6e-11 >seq17 Length=3182705 Score = 113 bits (124), Expect = 4e-20 Identities = 149/205 (73%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 ||||| ||| |||||| || |||||||| ||||||| ||| |||||||||||||| Sbjct 3006423 TGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGCCCGTCCTCCAGCTGC 3006482 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| || | || | | |||||| ||| || | || ||||||||| || || Sbjct 3006483 TTGCCGGCGAAGATGAGCCTCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTG 3006542 Query 48644 TGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701 ||||| | | || ||||| || | |||||| ||| | || ||||| || |||| Sbjct 3006543 GCCTTGACGTTGTCG--ATGGTGTCAGAGGACTCCACCTCAAGGGTGATGGTCTTGCCGG 3006600 Query 48702 TGAGAGTTTTCACAAAAATCTGCAT 48726 |||| || ||||| ||||||||||| Sbjct 3006601 TGAGGGTCTTCACGAAAATCTGCAT 3006625 Score = 104 bits (114), Expect = 2e-17 Identities = 147/205 (72%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 ||||| ||| |||||| || |||||||| ||||||| ||| |||||||||||||| Sbjct 3006195 TGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGCCCGTCCTCCAGCTGC 3006254 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| || | || | | |||||| ||| || | || ||||||||| || || Sbjct 3006255 TTGCCGGCGAAGATAAGCCTCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTG 3006314 Query 48644 TGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701 ||||| | | || ||||| || | |||||| ||| | || ||||| || |||| Sbjct 3006315 GCCTTGACGTTGTCG--ATGGTGTCAGAGGACTCCACCTCAAGGGTGATGGTCTTGCCGG 3006372 Query 48702 TGAGAGTTTTCACAAAAATCTGCAT 48726 |||| || || || || |||||||| Sbjct 3006373 TGAGGGTCTTGACGAAGATCTGCAT 3006397 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 ||||| ||| |||||| || |||||||| ||||| | ||| |||||||||||||| Sbjct 3114361 TGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTGCGCCCGTCCTCCAGCTGC 3114302 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || || | | || | | |||||| |||| || | | ||||||||| || || Sbjct 3114301 TTCCCAGCAAAGATGAGCCTCTGCTGGTCCAGAGGGATGCCCTCCTTGTCCTGGATCTTG 3114242 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||||| | | ||||||| ||||| ||| | || ||||| || |||||| Sbjct 3114241 GCCTTGAAATTGTCAATGGTATACCAGGACTCGACCTCTAGGGTGATGGTCTTGCCGGTG 3114182 Query 48704 AGAGTTTTCACAAAAATCTGCATC 48727 || || |||||||| ||||||||| Sbjct 3114181 AGGGTCTTCACAAAGATCTGCATC 3114158 >seq8 Length=4429347 Score = 102 bits (112), Expect = 7e-17 Identities = 144/201 (72%), Gaps = 1/201 (0%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || | |||||| || |||| |||||||||||||||||||| ||| | | Sbjct 2522455 CTCCTTCTGGACGTTGTAGTCGGCCAGCGTGCGCTCGTCCTCCAGCTGCTTCCCGGCAAA 2522396 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | |||||||| ||| ||| | ||||||||||||| || || ||||| | Sbjct 2522395 GATCAGGCGCTGCTGCTCCGGCGGGATACTTTCCTTGTCCTGGATCTTTGCCTTGACATT 2522336 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 || | ||||||| | ||| ||||| || | || || ||| | || || ||||| Sbjct 2522335 GGCGACGGTATCGCCGGTCTCGACCTCGAGCGTCACCGTCTTTCCGATCAGCGTCTTCAC 2522276 Query 48715 AAAAATCTGCATCGT-GTCTT 48734 || ||||||||||| ||||| Sbjct 2522275 GAAGATCTGCATCGTCGTCTT 2522255 >seq49 Length=1823295 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 ||||| ||| ||||| ||||||||||| || |||| || | |||||||||||| Sbjct 157008 TGAAGAGTGGATTCCTTCTGAATGTTGTAGTCCGCCAGGGTACGTCCATCCTCCAGCTGC 157067 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || || | |||| | ||||||||| ||| || | | ||||||||| || ||| Sbjct 157068 TTGCCTGCAAAAATCAGACGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTTC 157127 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||| | | | ||||| || | |||||| ||| | || || || || || ||| Sbjct 157128 GCCTTCACATTGTCAATGGTGTCTGAAGACTCTACCTCCAAGGTGATAGTCTTCCCAGTG 157187 Query 48704 AGAGTTTTCACAAAAATCTGCAT 48726 || || || ||||| |||||||| Sbjct 157188 AGGGTCTTGACAAAGATCTGCAT 157210 >seq1 Length=7984747 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 || ||||| | ||| | ||| | ||||| ||| |||||| || |||||||| |||||| Sbjct 3520435 CCACCGCGGAGCCTGAGCACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCC 3520494 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCC 48613 || || |||||||||||||||| ||| || | || | ||||||||| ||| Sbjct 3520495 AAGGTGCGGCCGTCCTCCAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGGTCC 3520548 >seq57 Length=1649376 Score = 82.4 bits (90), Expect = 6e-11 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTG 48582 |||||| ||| ||||| || ||||||||||| ||||| ||| | ||||||||||| Sbjct 1450765 ATGAAGAGTGGATTCCTTCTGGATGTTGTAATCTGCCAAGGTACGCCCATCCTCCAGCTG 1450706 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| || | | || | | ||||||||| || | | ||||||||| || || Sbjct 1450705 CTTCCCAGCAAATATAAGCCTCTGCTGATCTGGAGGAATTCCCTCCTTGTCCTGGATCTT 1450646 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 | ||| | ||||||| |||| |||| ||| | || ||||| || || || Sbjct 1450645 CGCCTTCACGTTATCTATGGTGTCGGAGCTCTCCACCTCAAGCGTGATGGTCTTGCCAGT 1450586 Query 48703 GAGAGTTTTCACAAAAATCTGCATC 48727 || ||||| ||||| || |||||| Sbjct 1450585 CAGCGTTTTGACAAATATTTGCATC 1450561 >seq5 Length=5556497 Score = 82.4 bits (90), Expect = 6e-11 Identities = 134/193 (69%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || ||||||||||| |||| ||| |||||||||||||||| ||| || | Sbjct 4050126 CTCCTTCTGGATGTTGTAATCGGCCAGCGTGCGCCCGTCCTCCAGCTGCTTCCCGGCGAA 4050067 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | |||||||| ||| ||| || | ||||||||| | || ||| | Sbjct 4050066 GATGAGCCGCTGCTGGTCCGGCGGGACGCCCTCCTTGTCCTGCACCTTGGCCTTCACGTT 4050007 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 ||| | || || | | |||| ||| | || || || || || || || || ||||| Sbjct 4050006 CGCCACCGTGTCCGACGGCTCCACCTCCAGCGTGATCGTCTTGCCCGTCAGCGTCTTCAC 4049947 Query 48715 AAAAATCTGCATC 48727 || ||||||||| Sbjct 4049946 GAAGATCTGCATC 4049934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421247991250625