Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oropetium_20thomaeum_20[genbank_20GCA_5F001182835.1_202015-07-20] 625 sequences; 243,174,629 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq10 120 2e-22 seq127 113 2e-20 seq91 113 2e-20 seq29 113 2e-20 seq68 111 8e-20 seq26 111 8e-20 seq55 109 3e-19 seq48 107 1e-18 seq4 107 1e-18 seq8 105 3e-18 seq85 104 1e-17 >seq10 Length=4141579 Score = 120 bits (132), Expect = 2e-22 Identities = 80/89 (90%), Gaps = 2/89 (2%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 |||||||||| |||||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 2632030 AATAAAAAAT--AATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 2632087 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| ||||||||||||||| |||| Sbjct 2632088 GACGCTCTAACCAACTGAGCTAATAGGCC 2632116 Score = 113 bits (124), Expect = 2e-20 Identities = 78/89 (88%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || |||||| |||||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 233369 AACAAAAAAGAGAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 233428 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| ||||||||||||||| |||| Sbjct 233429 GACGCTCTAACCAACTGAGCTAATAGGCC 233457 >seq127 Length=219053 Score = 113 bits (124), Expect = 2e-20 Identities = 76/85 (89%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| ||||||||||||| | | |||||||| ||||||||||||||||||||||||| Sbjct 60854 AAAAA--AAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACG 60911 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| ||||||||||||||| |||| Sbjct 60912 CTCTAACCAACTGAGCTAATAGGCC 60936 >seq91 Length=732539 Score = 113 bits (124), Expect = 2e-20 Identities = 78/89 (88%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || ||||| |||| ||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 285057 AACAAAAACACAAAGTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 284998 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| ||||||||||||||| |||| Sbjct 284997 GACGCTCTAACCAACTGAGCTAATAGGCC 284969 >seq29 Length=2487981 Score = 113 bits (124), Expect = 2e-20 Identities = 75/84 (89%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 ||||| | ||||||||||| | | |||||||| |||||||||||||||||||||||||| Sbjct 1048772 AAAATAATATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGC 1048713 Query 11506 TCTRACCAACTGAGCTAATGGGCC 11529 ||| ||||||||||||||| |||| Sbjct 1048712 TCTAACCAACTGAGCTAATAGGCC 1048689 Score = 100 bits (110), Expect = 1e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 || ||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||| Sbjct 950940 AACTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACC 950999 Query 11513 AACTGAGCTAATGGGCC 11529 | |||||||||| |||| Sbjct 951000 AGCTGAGCTAATAGGCC 951016 >seq68 Length=1327902 Score = 111 bits (122), Expect = 8e-20 Identities = 77/87 (89%), Gaps = 1/87 (1%) Strand=Plus/Plus Query 11445 AAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||| || | ||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 401708 AAAAATAAACTGTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 401767 Query 11504 GCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||| ||||||||||||||| ||||| Sbjct 401768 GCTCTAACCAACTGAGCTAATAGGCCG 401794 >seq26 Length=2708857 Score = 111 bits (122), Expect = 8e-20 Identities = 72/80 (90%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||||||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 1868815 AAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 1868756 Query 11512 CAACTGAGCTAATGGGCCGT 11531 || |||||||||| |||||| Sbjct 1868755 CAGCTGAGCTAATAGGCCGT 1868736 >seq55 Length=1724501 Score = 109 bits (120), Expect = 3e-19 Identities = 71/79 (90%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 834650 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 834591 Query 11515 CTGAGCTAATGGGCCGTCG 11533 |||||||||| ||||| || Sbjct 834590 CTGAGCTAATAGGCCGACG 834572 >seq48 Length=1841695 Score = 107 bits (118), Expect = 1e-18 Identities = 78/90 (87%), Gaps = 1/90 (1%) Strand=Plus/Plus Query 11441 AATAAAAAATCAA-ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 |||||||| || | ||||||||| | | |||||||| |||||||||||||||||||| Sbjct 694301 AATAAAAAGGTAAGAGTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCA 694360 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||| ||||||||||||||| |||| Sbjct 694361 CGACGCTCTAACCAACTGAGCTAATAGGCC 694390 >seq4 Length=5694366 Score = 107 bits (118), Expect = 1e-18 Identities = 74/83 (89%), Gaps = 1/83 (1%) Strand=Plus/Minus Query 11447 AAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCT 11506 ||| ||||| |||||||| | | |||||||| ||||||||||||||||||||||||||| Sbjct 587260 AAAACAAAT-GGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCT 587202 Query 11507 CTRACCAACTGAGCTAATGGGCC 11529 || ||||||||||||||| |||| Sbjct 587201 CTAACCAACTGAGCTAATAGGCC 587179 Score = 86.0 bits (94), Expect = 3e-12 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | ||||| || |||||| ||||||||| | |||| ||||| |||||| Sbjct 584591 TGGCCCATGCAGGTCTCGAATCTGCGACCTACGCGTTATTCGGACGAGGCTCTAACCAAC 584532 Query 11516 TGAGCTAATGGGCCGT 11531 ||||||||| |||||| Sbjct 584531 TGAGCTAATAGGCCGT 584516 >seq8 Length=4429347 Score = 105 bits (116), Expect = 3e-18 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 607250 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 607309 Query 11516 TGAGCTAATGGGCCG 11530 ||||||||| ||||| Sbjct 607310 TGAGCTAATAGGCCG 607324 Score = 105 bits (116), Expect = 3e-18 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 3473122 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 3473181 Query 11515 CTGAGCTAATGGGCC 11529 |||||||||| |||| Sbjct 3473182 CTGAGCTAATAGGCC 3473196 >seq85 Length=818559 Score = 104 bits (114), Expect = 1e-17 Identities = 74/85 (87%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| ||| ||||||||| | | || ||||| ||||||||||||||||||||||||| Sbjct 655782 AAAAA--AAACTGGCCCATGCAGGTCTCCAACCTGCGACCTTCGCGTTATTAGCACGACG 655839 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| ||||||||||||||| |||| Sbjct 655840 CTCTAACCAACTGAGCTAATAGGCC 655864 Lambda K H 0.639 0.410 0.921 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261489208172500