Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oropetium_20thomaeum_20[genbank_20GCA_5F001182835.1_202015-07-20] 625 sequences; 243,174,629 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq90 140 5e-29 seq2 140 5e-29 seq8 136 6e-28 seq3 136 6e-28 seq1 131 3e-26 seq55 127 3e-25 seq72 120 5e-23 seq7 114 2e-21 >seq90 Length=736395 Score = 140 bits (154), Expect = 5e-29 Identities = 179/244 (73%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || |||| | || || || || |||||||| || ||||||||||| || | Sbjct 662971 CGCCAAGCGCCACCGCAAGGTC-CTCCGCGACAACATCCAGGGCATCACCAAGCCGGCGA 663029 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 | || | ||||| || | || || |||||||| |||| || | |||| ||||||| Sbjct 663030 TACGGAGGCTGGCGCGCAGGGGCGGCGTCAAGCGCATCTCCGGTCTCATCTACGAAGAGA 663089 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || | |||||||||||| ||| ||| |||| || || || || |||| Sbjct 663090 CCCGCGGCGTGCTCAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTCACATACACCG 663149 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 |||||||| || ||||| |||||| ||||||| |||||||||| | || || || | Sbjct 663150 AGCACGCTCGCCGGAAGACGGTCACCGCCATGGACGTCGTCTATGCGCTCAAGCGCCAGG 663209 Query 16671 GCCG 16674 |||| Sbjct 663210 GCCG 663213 >seq2 Length=7708084 Score = 140 bits (154), Expect = 5e-29 Identities = 178/245 (73%), Gaps = 0/245 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 815773 CGCCAAGCGCCACCGCAAGGTGCTCCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 815714 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| | ||||| | | ||||| |||||||| |||| || | |||| || |||| Sbjct 815713 CCGGAGGCTGGCCAGGAGGGGTGGCGTCAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 815654 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | |||||||||||| ||| ||| |||| || || || ||| ||||| Sbjct 815653 CCGCGGCGTGCTCAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGA 815594 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| | ||| ||||| |||||| ||||||| ||||||| || | || || || || Sbjct 815593 GCACGCCAGACGCAAGACCGTCACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGGG 815534 Query 16672 CCGTA 16676 |||| Sbjct 815533 ACGTA 815529 >seq8 Length=4429347 Score = 136 bits (150), Expect = 6e-28 Identities = 176/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | || || || |||||||| || ||||||||||| || || Sbjct 2159672 CGCGAAGCGTCACCGGAAGGTGCTCCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 2159613 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| | ||||| || ||||| || |||||||| |||| || | |||| || |||| Sbjct 2159612 CCGGAGGCTGGCGCGCCGTGGCGGCGTCAAGCGCATCTCCGGGCTCATCTACGAGGAGAC 2159553 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | |||||||||||| ||| ||| |||| || || || || ||||| Sbjct 2159552 CCGCGGCGTGCTCAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTCACATACACCGA 2159493 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || ||||| |||||| ||||||| ||||||| || | || || || || Sbjct 2159492 GCACGCGCGCCGCAAGACCGTCACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGGG 2159433 Query 16672 CCG 16674 ||| Sbjct 2159432 CCG 2159430 >seq3 Length=7343539 Score = 136 bits (150), Expect = 6e-28 Identities = 176/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | || || || |||||||| || ||||||||||| || || Sbjct 1159673 CGCGAAGCGTCACCGGAAGGTGCTCCGCGACAACATCCAGGGCATCACCAAGCCGGCGAT 1159614 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 | | || ||||| | | || || || ||||| |||| || | |||| || |||| Sbjct 1159613 CAGGCGGCTGGCGAGGAGGGGCGGCGTGAAGCGCATCTCCGGGCTCATCTACGAGGAGAC 1159554 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | || | |||||||||||| ||| ||| |||| || || || ||| ||||| Sbjct 1159553 TCGCGGCGTGCTCAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGA 1159494 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || ||||| |||||| |||||||| ||||||| || | ||||| || || Sbjct 1159493 GCACGCCCGCCGCAAGACCGTCACCGCCATGGATGTCGTCTACGCGCTCAAACGCCAGGG 1159434 Query 16672 CCG 16674 ||| Sbjct 1159433 CCG 1159431 >seq1 Length=7984747 Score = 131 bits (144), Expect = 3e-26 Identities = 189/267 (71%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || || | ||| || || ||||||||||| ||||||||||| || || Sbjct 5877124 CGCGAAGCGCCACCGGAAGGTTCTCCGCGACAACATCCAAGGTATCACCAAGCCGGCGAT 5877183 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| | ||||| | | || || || ||||| |||| || | |||| || |||| Sbjct 5877184 CCGGAGGCTGGCCAGGAGGGGCGGCGTGAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 5877243 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | |||||||||||| ||| ||| |||| || || || ||| ||||| Sbjct 5877244 CCGCGGCGTGCTCAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGA 5877303 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || ||||| |||||| ||||||| ||||||| || | || || || || Sbjct 5877304 GCACGCGCGCCGCAAGACCGTCACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGGG 5877363 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTA 16698 ||| | | || ||||| || |||| Sbjct 5877364 CCGCACCCTCTACGGTTTCGGCGGTTA 5877390 >seq55 Length=1724501 Score = 127 bits (140), Expect = 3e-25 Identities = 176/244 (72%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| | || || || || |||||||| || ||||||||||| || | Sbjct 1418237 CGCGAAGCGTCACCGCAAGGTC-CTCCGCGACAACATCCAGGGCATCACCAAGCCGGCGA 1418295 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| | ||||| | | ||||| || ||||| |||| || | |||| || |||| Sbjct 1418296 TCCGGAGGCTGGCGAGGAGGGGTGGCGTGAAGCGCATCTCCGGTCTCATCTACGAGGAGA 1418355 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 |||| || | |||||||||||| ||| || |||| || || || || || | Sbjct 1418356 CCCGTGGCGTGCTCAAGATCTTCCTCGAGAATGTCATCCGCGACGCCGTCACGTACACGG 1418415 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || ||||| |||||| ||||||| ||||||| || | || || || | Sbjct 1418416 AGCACGCCCGCCGGAAGACCGTCACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGG 1418475 Query 16671 GCCG 16674 |||| Sbjct 1418476 GCCG 1418479 >seq72 Length=1231634 Score = 120 bits (132), Expect = 5e-23 Identities = 189/271 (70%), Gaps = 0/271 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| |||| || || || |||||||| || ||||||||||| || || Sbjct 1092435 CGCCAAGCGTCACCGCAAGGTGCTCCGCGACAACATCCAGGGCATCACCAAGCCGGCGAT 1092376 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| | ||||| | | || || || ||||| |||| || | |||| || |||| Sbjct 1092375 CCGGAGGCTGGCGAGGAGGGGCGGCGTGAAGCGCATCTCCGGGCTCATCTACGAGGAGAC 1092316 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | |||||||||||| ||| ||| |||| || || || ||| ||||| Sbjct 1092315 CCGCGGCGTGCTCAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGA 1092256 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| || ||||| |||||| ||||||| ||||||| || | || || || || Sbjct 1092255 ACACGCCCGCCGCAAGACCGTCACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGGG 1092196 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCT 16702 || | | || || || || ||| |||| Sbjct 1092195 ACGCACCCTCTACGGATTCGGCGGTTGATCT 1092165 >seq7 Length=4730600 Score = 114 bits (126), Expect = 2e-21 Identities = 158/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || ||||| || ||||| | | || Sbjct 2378560 CTGCGCGACAACATCCAGGGCATCACCAAGCCCGCGATCCGGCGCCTGGCGAGGAGGGGC 2378619 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| |||| || | |||| || |||| || | || | ||||||||| Sbjct 2378620 GGCGTGAAGCGCATCTCGGGGCTCATCTACGAGGAGACCCGCGGCGTGCTCAAGATCTTC 2378679 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| || | || || || ||| ||||||||||| || ||||| ||| Sbjct 2378680 CTAGAGAACGTCATACGCGACGCCGTCACCTACACCGAGCACGCGCGCCGGAAGACCGTC 2378739 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 ||| | |||||| | ||||| || | || ||||| ||||| Sbjct 2378740 ACCGCGATGGATGTGGTCTACGCGCTCAAGCGTCAGGGCCG 2378780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074628558125