Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oropetium_20thomaeum_20[genbank_20GCA_5F001182835.1_202015-07-20] 625 sequences; 243,174,629 total letters Query= NC_006820.1 Length=196280 Score E Sequences producing significant alignments: (Bits) Value seq15 609 3e-169 seq72 134 2e-26 seq11 87.8 2e-12 >seq15 Length=3529114 Score = 609 bits (674), Expect = 3e-169 Identities = 743/1009 (74%), Gaps = 12/1009 (1%) Strand=Plus/Minus Query 137875 TGGATGACTGGATTAAACGAGATCGCTTTGTATTTGTGGGTTGGTCTGGACTACTACTTT 137934 |||| |||||| | | | || || || || ||||| || ||||| || ||| | || | Sbjct 3061855 TGGACGACTGGTTACGAAGGGACCGTTTCGTTTTTGTAGGATGGTCCGGCCTATTGCTCT 3061796 Query 137935 TTCCCACTGCTTATTTGGCCCTTGGTGGCTGGCTTACTGGCACAACGTTTGTTACAAGCT 137994 |||| ||||||||| || | || || ||| |||| || || || ||||| || | Sbjct 3061795 TTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACTACTTTTGTAACTTCTT 3061736 Query 137995 GGTACACCCACGGGTTGGCGTCTAGTT---ATCTTGAAGGCGCTAATTTCCTCACAGCAG 138051 |||| ||||| || ||||| ||||| || | ||||| |||||| | || || | Sbjct 3061735 GGTATACCCATGGATTGGC---TAGTTCCTATTTGGAAGGTTGCAATTTCTTAACGGCGG 3061679 Query 138052 CTGTTTCGACTCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGT 138111 | ||||| || |||||| || | | | || ||| | | ||||| ||||| || || Sbjct 3061678 CAGTTTCCACCCCTGCTAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGACCGGAAG 3061619 Query 138112 CTCAAGGAGATATCGTCCGCTGGTTCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCC 138171 | ||||| ||| | || |||| |||| | ||||| || ||||||||||| || |||| Sbjct 3061618 CACAAGGGGATTTTACTCGTTGGTGCCAATTAGGGGGTCTGTGGACTTTTGTCGCTCTCC 3061559 Query 138172 ACGGGGCCTTTAGTCTGATTGGATTCATGCTTCGCCAGTTTGAGATCTCTCG-TCTGGTA 138230 | ||||| ||| || || || |||||| | || || ||||| | || | |||| | Sbjct 3061558 ATGGGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTAGGTCTGTT- 3061500 Query 138231 GGCA--TCCGTCCCTACAACGCAATCGCATTCTCTGGTCCCATCGCTGTGTTCGTCAGCG 138288 || | || || || || ||||| ||||||||||||| |||||||| || || || Sbjct 3061499 --CAATTGCGGCCTTATAATGCAATTTCATTCTCTGGTCCAATCGCTGTTTTTGTTTCCG 3061442 Query 138289 TGTTCCTGATGTATCCTTTGGGTCAATCCAGTTGGTTCTTTGCTCCCTCCTTTGGTGTGG 138348 | ||||| || ||||| |||| ||||| ||||||||||||| || ||||| || | Sbjct 3061441 TATTCCTTATTTATCCACTGGGACAATCTGGTTGGTTCTTTGCACCGAGTTTTGGCGTAG 3061382 Query 138349 CAGCAATCTTCCGATTCCTGTTGTTCCTTCAGGGTTTCCATAACTGGACCCTCAACCCCT 138408 |||| || || |||||| | | ||| | || || || ||||| ||||| | ||||||| Sbjct 3061381 CAGCTATATTTCGATTCATCCTTTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCCT 3061322 Query 138409 TTCATATGATGGGCGTAGCAGGTATTCTTGGTGGTGCTCTGCTCTGTGCTATTCATGGTG 138468 ||||||||||||| || || || | | |||| ||||| || || ||||||||||| | Sbjct 3061321 TTCATATGATGGGAGTTGCCGGAGTATTAGGTGCAGCTCTCCTATGCGCTATTCATGGGG 3061262 Query 138469 CTACAGTAGAAAATACTTTGTATGAAGATGGCGAACAATCAAATACTTTTAAAGCATTTG 138528 |||| |||||||| ||| | | |||||||| || ||||||| || ||| ||| Sbjct 3061261 CTACTGTAGAAAACACTCTATTCGAAGATGGTGATGGTGCAAATACCTTCCGAGCTTTTA 3061202 Query 138529 AACCTACTCAAGAAGAAGAAACCTATTCAATGGTTACTGCTAACCGTTACTGGTCGCAAA 138588 | || ||||||| |||||||| ||||||||||| || |||||||| | ||||| |||| Sbjct 3061201 ACCCCACTCAAGCGGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAA 3061142 Query 138589 TCTTTGGAATTGCTTTTAGTAATAAGCGTTGGCTTCACTTCTTTATGCTCTTTGTTCCCG 138648 ||||||| |||||||| ||||| |||||| | || ||||||||||| ||||| |||| Sbjct 3061141 TCTTTGGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTTGTACCCG 3061082 Query 138649 TCATGGGTCTCTGGACTAGTAGTATTGGTATTATTGGTCTTGCTCTTAACCTACGAGCGT 138708 ||| ||| | |||| ||| |||||| | |||| || ||||| |||||||| || | Sbjct 3061081 TCACCGGTTTATGGATGAGTGCTATTGGCGTAGTTGGCCTGGCTCTGAACCTACGTGCCT 3061022 Query 138709 ATGATTTCGTATCGCAAGAAATTCGTGCAGCAGAAGATCCTGAATTCGAGACCTTCTACA 138768 |||| ||||| || || ||||| |||||||| |||||||||||||| ||||| ||||||| Sbjct 3061021 ATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACA 3060962 Query 138769 CCAAGAACATTCTTCTGAATGAAGGTCTGCGTGCCTGGATGGCTCCTGTGGATCAACCTC 138828 |||| || |||||| | || || ||| | ||||| |||||||| || |||||| |||| Sbjct 3060961 CCAAAAATATTCTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTC 3060902 Query 138829 ACGAAAACTTTGTTTTTCCTGAAGAAGTATTGCCAAGAGGCAACGCTCT 138877 | ||||| || | || ||||| || || | ||| | || |||||||| Sbjct 3060901 ATGAAAATCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 3060853 >seq72 Length=1231634 Score = 134 bits (148), Expect = 2e-26 Identities = 191/266 (72%), Gaps = 6/266 (2%) Strand=Plus/Plus Query 138129 CGCTGGTTCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCCACGGGGCCTTTAGTCTG 138188 || |||| |||| | ||||| || ||||||||||| || ||||| ||||| ||| || Sbjct 291143 CGTTGGTGCCAATTAGGGGGTCTGTGGACTTTTGTCGCTCTCCATGGGGCTTTTGCACTA 291202 Query 138189 ATTGGATTCATGCTTCGCCAGTTTGAGATCTCTCG-TCTGGTAGGCA--TCCGTCCCTAC 138245 || || |||||| | || || ||||| | || | |||| | || | || || || Sbjct 291203 ATAGGTTTCATGTTACGTCAATTTGAACTTGCTAGGTCTGTT---CAATTGCGGCCTTAT 291259 Query 138246 AACGCAATCGCATTCTCTGGTCCCATCGCTGTGTTCGTCAGCGTGTTCCTGATGTATCCT 138305 || ||||| |||||| |||||| |||||||| || || ||| ||||| || ||||| Sbjct 291260 AATGCAATTTCATTCTTTGGTCCAATCGCTGTTTTTGTTTCCGTATTCCTTATTTATCCA 291319 Query 138306 TTGGGTCAATCCAGTTGGTTCTTTGCTCCCTCCTTTGGTGTGGCAGCAATCTTCCGATTC 138365 |||| ||||| ||||||||||||| || | ||| || ||||| || || ||||| Sbjct 291320 CTGGGACAATCTGGTTGGTTCTTTGCACCGAGTTCTGGCGTAGCAGCTATATTTTGATTC 291379 Query 138366 CTGTTGTTCCTTCAGGGTTTCCATAA 138391 | | ||| | || || || ||||| Sbjct 291380 ATCCTTTTCTTCCAAGGATTTCATAA 291405 >seq11 Length=3891467 Score = 87.8 bits (96), Expect = 2e-12 Identities = 139/208 (67%), Gaps = 31/208 (15%) Strand=Plus/Plus Query 138387 CATAACTGGACCCTCAACCCCTTTCATATGATGGGCGTAGCAGGTATTCTTGGTGGTGCT 138446 ||||| ||||| | ||| |||||||| ||||||| || || || | | |||| ||| Sbjct 2453589 CATAATTGGACGTTGAACGCCTTTCATTTGATGGGAGTTGCCGGAGTATTAGGTGCCGCT 2453648 Query 138447 CTGCTCTGTGCTATTCATGGTGCTACAGTAGAAAATACTTTGTATGAAGATGGCGAACAA 138506 || || || | ||||||||| ||||| ||| Sbjct 2453649 CTCCTATGCGTTATTCATGGGGCTACCGTA------------------------------ 2453678 Query 138507 TCAAATACTTTTAAAGCATTTGAACCTACTCAAGAAGAAGAAACCTATTCAATGGTTACT 138566 ||||||| || ||| ||| | || ||||||| ||||||||| ||||||||||| ||| Sbjct 2453679 -CAAATACCTTCCGAGCTTTTAACCCCACTCAAGCAGAAGAAACTTATTCAATGGTCACT 2453737 Query 138567 GCTAACCGTTACTGGTCGCAAATCTTTG 138594 |||||||| | || || |||||||||| Sbjct 2453738 GCTAACCGCTTTTGATCCCAAATCTTTG 2453765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627963094000000