Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oropetium_20thomaeum_20[genbank_20GCA_5F001182835.1_202015-07-20] 625 sequences; 243,174,629 total letters Query= NC_006884.2 Length=178249 Score E Sequences producing significant alignments: (Bits) Value seq15 352 3e-92 >seq15 Length=3529114 Score = 352 bits (390), Expect = 3e-92 Identities = 703/1039 (68%), Gaps = 23/1039 (2%) Strand=Plus/Minus Query 171795 TTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 171854 ||||| || | || || |||||| || || |||||||| || | |||||||| || Sbjct 3061865 TTTGATATTATGGACGACTGGTTACGAAGGGACCGTTTCGTTTTTGTAGGATGGTCCGGC 3061806 Query 171855 CTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACTTTC 171914 || || || || ||||||||||| | || | || |||||||| ||| |||||||| Sbjct 3061805 CTATTGCTCTTTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACTACTTTT 3061746 Query 171915 GTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAGCAAACTTTTTA 171974 || || || ||||| || ||||| | || || ||| | || || || || ||| Sbjct 3061745 GTAACTTCTTGGTATACCCATGGATTGGCTAGTTCCTATTTGGAAGGTTGCAATTTCTTA 3061686 Query 171975 ACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTCCTATGGGGA 172034 || || ||||| || || |||| | || | | | || | | ||| | ||||||||| Sbjct 3061685 ACGGCGGCAGTTTCCACCCCTGCTAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGA 3061626 Query 172035 CCTGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAACTTTGTA 172094 || || |||||||| ||| || || |||| |||||||| || || |||| ||||| Sbjct 3061625 CCGGAAGCACAAGGGGATTTTACTCGTTGGTGCCAATTAGGGGGTCTGTGGACTTTTGTC 3061566 Query 172095 GCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTTGAGATTGC-AGG 172153 || | ||||| | |||| ||| |||||||||||| | | || ||||| |||| ||| Sbjct 3061565 GCTCTCCATGGGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTAGG 3061506 Query 172154 ACTTGTTGGGATACGTCCTTACAACGCACTAGCATTCTCAGCAGTTATTGCAGTATTCAC 172213 | |||| | || ||||| || ||| | ||||||| | || || || || Sbjct 3061505 TC-TGTTCAATTGCGGCCTTATAATGCAATTTCATTCTCTGGTCCAATCGCTGTTTTTGT 3061447 Query 172214 GAGCATCTTTCTAATATATCCATTAGGTCAGCATAGTTGGTTCTTCGCACCTTCATTTGG 172273 | | || || || |||||| | || || | |||||||||| ||||| ||||| Sbjct 3061446 TTCCGTATTCCTTATTTATCCACTGGGACAATCTGGTTGGTTCTTTGCACCGAGTTTTGG 3061387 Query 172274 TGTCGCAGCAATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAATATAACTCTTAA 172333 || ||||| || ||||| | || | ||| | || || || || ||| || | || Sbjct 3061386 CGTAGCAGCTATATTTCGATTCATCCTTTTCTTCCAAGGATTTCATAATTGGACGTTGAA 3061327 Query 172334 TCCATTTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTATGTGCCATACA 172393 || |||||||||||||| || || || || | |||| ||| | ||||| || || || Sbjct 3061326 CCCCTTTCATATGATGGGAGTTGCCGGAGTATTAGGTGCAGCTCTCCTATGCGCTATTCA 3061267 Query 172394 TGGTGCAACAGTACAGAACACATTGTATGAAGACACATCACAATACACTGAAGGTAAGAT 172453 ||| || || || |||| ||| | ||| || || | ||| ||| Sbjct 3061266 TGGGGCTACTGT--AGAAAACACTCTAT---------TC-GAAGATGGTGATGGT----- 3061224 Query 172454 TCAATCTACAACTTTCAGAGCATTCGATCCTACACAGGAAGAAGAAACTTATAGTATGAT 172513 | | || ||| |||| || | || || || | |||||||||||| ||| | Sbjct 3061223 ----GCAAATACCTTCCGAGCTTTTAACCCCACTCAAGCGGAAGAAACTTATTCAATGGT 3061168 Query 172514 TACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCATTTTCAAACAAAAGATTCTT 172573 || |||||| | || ||||| || || |||||| | || ||||| || ||| | | || Sbjct 3061167 CACCGCTAACCGCTTTTGGTCCCAAATCTTTGGTGTTGCTTTTTCCAATAAACGTTGGTT 3061108 Query 172574 ACACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCTATAGGTATCGT 172633 ||| ||| ||||| | || ||||| |||| ||| | |||| |||| || | || Sbjct 3061107 ACATTTCTTTATGCTATTTGTACCCGTCACCGGTTTATGGATGAGTGCTATTGGCGTAGT 3061048 Query 172634 AGGTCTTGCACTTAACCTCAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGCAGA 172693 || || || || ||||| | || || ||||| || || || || || | ||||| || Sbjct 3061047 TGGCCTGGCTCTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGA 3060988 Query 172694 AGACCCAGAGTTTGAAACCTTCTACACTAAGAACATTCTTCTTAATGAAGGTATGAGAGC 172753 ||| || || ||||| || |||||||| || || |||||| | || || ||||| | || Sbjct 3060987 AGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACGAGGGTATTCGTGC 3060928 Query 172754 ATGGATGTCATCTGTCGATCAACCCCATGAGAACTTTGTGTTCCCAGAAGAAGTCTTGCC 172813 |||||| || || ||||| || ||||| || || | ||||| || || || | || Sbjct 3060927 GTGGATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACC 3060868 Query 172814 ACGAGGCAACGCACTATAA 172832 ||| || ||||| || ||| Sbjct 3060867 ACGTGGAAACGCTCTTTAA 3060849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570264344775000