Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oropetium_20thomaeum_20[genbank_20GCA_5F001182835.1_202015-07-20] 625 sequences; 243,174,629 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq46 91.5 4e-13 seq153 86.0 2e-11 seq61 86.0 2e-11 >seq46 Length=1857289 Score = 91.5 bits (100), Expect = 4e-13 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCC 363681 ||||| || || ||| ||||| |||| ||| || || ||| | |||||| | || | Sbjct 1671329 ATGAAAGATGACAGCATTGAGGGAATCTATGATACTCTGAAGGAATGTGCTGTCATAAGC 1671388 Query 363682 AAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGTTACAT 363740 ||| |||||| ||||||||||| || | |||||| | || || || | || || || Sbjct 1671389 AAGTCTGCAGGGGGAATTGGTGTCTCTGTTCACAATATCCGAGCTACTG-GTAGCTATAT 1671447 Query 363741 TCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATAC 363800 | | || ||| ||| ||| |||||| | ||||| ||| | ||||| || | |||| Sbjct 1671448 TAGGGGAACAAATGGAACCTCAAATGGGATTGTTCCTATGTTACGTGTCTTCAATGATAC 1671507 Query 363801 TGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGG 363839 ||| | || || || || ||||| || || | ||||| Sbjct 1671508 TGCTCGTTATGTTGATCAAGGTGGCGGCAAAAGAAAAGG 1671546 >seq153 Length=68039 Score = 86.0 bits (94), Expect = 2e-11 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 111701 CCAGTTTTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATAT 111760 |||||||||||| | ||||| ||| || ||||| |||||||| || |||||||| || Sbjct 55088 CCAGTTTTATGTTGAGAACGGGGAGCTATCGTGCCAGATGTATCAACGCTCTGCTGACAT 55029 Query 111761 TGGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCA 111820 |||||||| ||||| || || |||||| || | || || || ||| | || ||||| Sbjct 55028 GGGTCTTGGAGTTCCATTCAACATTGCATCATATTCTCTTCTCACATGCATGATTGCTCA 54969 >seq61 Length=1472992 Score = 86.0 bits (94), Expect = 2e-11 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 111701 CCAGTTTTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATAT 111760 |||||||||||| | ||||| ||| || ||||| |||||||| || |||||||| || Sbjct 352336 CCAGTTTTATGTTGAGAACGGGGAGCTATCGTGCCAGATGTATCAACGCTCTGCTGACAT 352395 Query 111761 TGGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCA 111820 |||||||| ||||| || || |||||| || | || || || ||| | || ||||| Sbjct 352396 GGGTCTTGGAGTTCCATTCAACATTGCATCATATTCTCTTCTCACATGCATGATTGCTCA 352455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303343162988750