Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oropetium_20thomaeum_20[genbank_20GCA_5F001182835.1_202015-07-20] 625 sequences; 243,174,629 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq12 89.7 7e-13 seq46 84.2 3e-11 >seq12 Length=3772834 Score = 89.7 bits (98), Expect = 7e-13 Identities = 157/226 (69%), Gaps = 6/226 (3%) Strand=Plus/Minus Query 63226 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63285 ||| || ||||| | || | || || | ||| |||| | | ||| |||| || || Sbjct 2780919 TCCACCTTGATCAACATAACGTGCAGTATCATTGAAAACACGTAGCATAGGAACAAGTCC 2780860 Query 63286 ATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63345 || || || ||||| || ||| |||||| |||||| | || ||||||||| |||||| Sbjct 2780859 GTTAGAAGTCCCATTAGTTCCTCGGATATAACTTCCAGTAGCTCGAATATTATGAATTGA 2780800 Query 63346 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGC-GCATCGTTTTAACG--TATCATA 63402 | ||| ||||| || || |||| | ||| || ||| | || | ||||||| Sbjct 2780799 GATACCGATTCCTCCAGCAGTTTT---GCTTATCGCAGCACATTCCGAAAGAGTATCATA 2780743 Query 63403 GATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 63448 || ||||| ||||||||||| ||||| | || ||||||||| Sbjct 2780742 AATTCCCTCAATACTATCATCTTTCATGCAGATAAGGAAACAGCTA 2780697 >seq46 Length=1857289 Score = 84.2 bits (92), Expect = 3e-11 Identities = 151/221 (68%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 63227 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 63286 || || ||||| | || | ||| || | ||| | || | ||||| |||| ||| ||| Sbjct 1671531 CCACCTTGATCAACATAACGAGCAGTATCATTGAAGACACGTAACATAGGAACAATCCCA 1671472 Query 63287 TTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 63346 || || || ||||| || || |||||||| ||| | || || ||||| || || Sbjct 1671471 TTTGAGGTTCCATTTGTTCCCCTAATATAGCTACCAGTAGCTCGGATATTGTGAACAGAG 1671412 Query 63347 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 63406 | ||| ||||||||||| || || | || ||| || | ||||||||||| Sbjct 1671411 ACACCAATTCCCCCTGCAGACTTGCTTATGACAGCACATTCCTTCAGAGTATCATAGATT 1671352 Query 63407 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 63447 ||||| || || ||||| ||||| || || |||||||| Sbjct 1671351 CCCTCAATGCTGTCATCTTTCATGCAAATAAGGAAACAGCT 1671311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633627049750000