Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oropetium_20thomaeum_20[genbank_20GCA_5F001182835.1_202015-07-20] 625 sequences; 243,174,629 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq57 116 3e-21 seq24 107 2e-18 seq17 89.7 4e-13 >seq57 Length=1649376 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | || || || |||| || | || || ||| ||| Sbjct 1450106 ATGCAGATCTTTGTGAAGACGCTCACTGGAAAGACCATAACTCTTGAGGTTGAGAGCTCT 1450165 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || ||||| ||| ||| ||||| ||||| || ||||||||||| Sbjct 1450166 GACACCATTGATAATGTGAAGGCAAAGATCCAAGACAAGGAAGGCATCCCACCTGACCAG 1450225 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || |||| ||||| || || || | || |||| ||||| ||| ||||||||| Sbjct 1450226 CAGAGGCTTATATTTGCTGGAAAGCAGCTGGAGGATGGACGCACATTGGCTGATTACAAT 1450285 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || |||||||| || || || || || | || ||||||| Sbjct 1450286 ATCCAGAAGGAATCCACACTTCACTTGGTCCTTCGCCTTCGAGGAGG 1450332 Score = 102 bits (112), Expect = 7e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||||||||| || || |||| || || ||||||| | || |||||| || Sbjct 1450562 ATGCAAATATTTGTCAAAACGCTGACTGGCAAGACCATCACGCTTGAGGTGGAGAGCTCC 1450621 Query 25059 GACACTATCGAGTCAC-TGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || || | || ||||| || ||| ||||| || || ||||| || || || Sbjct 1450622 GACACCATAGA-TAACGTGAAGGCGAAGATCCAGGACAAGGAGGGAATTCCTCCAGATCA 1450680 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || |||| ||||| || || || | || |||| || || ||| |||||||| Sbjct 1450681 GCAGAGGCTTATATTTGCTGGGAAGCAGCTGGAGGATGGGCGTACCTTGGCAGATTACAA 1450740 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || |||||||| || ||| | || || Sbjct 1450741 CATCCAGAAGGAATCCACTCTTCATCTTGTCCT 1450773 >seq24 Length=2721981 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||| || || ||||||| | || |||||||| || Sbjct 300355 ATGCAGATCTTCGTGAAGACCTTGACGGGGAAGACCATCACGTTGGAGGTGGAGTCCTCG 300414 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | ||| || ||| ||||| || || || ||||| ||||| Sbjct 300415 GACACCATCGACAACGTAAAGGCTAAGATCCAGGACAAGGAGGGCATCCCACCGGACCAG 300474 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || ||||| || || | || |||| ||||| | | || |||||| Sbjct 300475 CAGCGCCTCATCTTCGCCGGAAAGCAGCTCGAGGATGGCCGCACCCTCGCTGACTACAAT 300534 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || ||||||||||| || | ||||| Sbjct 300535 ATCCAGAAGGAATCCACGCTTCACCTGGTGCT 300566 >seq17 Length=3182705 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | ||||| || ||||||| | || |||||||| ||| Sbjct 3006169 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTGGAGTCCTCT 3006110 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | ||| || ||| ||||| || || || || || ||||| Sbjct 3006109 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAG 3006050 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||||||||| || | || || | || || | | || ||||| Sbjct 3006049 CAGAGGCTCATCTTTGCCGGCAAGCAGCTTGAGGACGGGCGTACCCTTGCTGACTACAAC 3005990 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || ||||| || || | ||||| Sbjct 3005989 ATCCAGAAGGAGTCCACCCTCCACCTGGTGCT 3005958 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAA----ATCCATCACAGTCGAAGTGGAGTC 25054 ||||| || ||||| ||||| | || || || ||| ||||| | || |||||||| Sbjct 3114840 ATGCAGATCTTTGTCAAGACCCTCACTGGCAAGACCATCAATCACCCTGGAGGTGGAGTC 3114899 Query 25055 GTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 |||||||| ||||| ||||| || ||| ||||| ||||| || | || || Sbjct 3114900 CTCTGACACCATCGACAACGTGAAGGCTAAGATCCAAGACAAGGAAGGCATCCGCCCGGA 3114959 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||| || | || ||||||||||| || | || || | || || | | || || Sbjct 3114960 CCAGCAGAGGCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGACGTACCCTCGCTGACTA 3115019 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || || || ||||| || || | ||||| | || || ||||| Sbjct 3115020 CATCATCCAGAAGGAGTCCACCCTTCACCTTGTGCTCCGCCTCAGGGGAGG 3115070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433324699259375