Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oropetium_20thomaeum_20[genbank_20GCA_5F001182835.1_202015-07-20] 625 sequences; 243,174,629 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq23 123 5e-23 seq35 95.1 2e-14 seq3 95.1 2e-14 seq77 93.3 9e-14 seq21 93.3 9e-14 seq8 93.3 9e-14 seq6 93.3 9e-14 seq2 93.3 9e-14 seq111 87.8 4e-12 >seq23 Length=2780208 Score = 123 bits (136), Expect = 5e-23 Identities = 541/849 (64%), Gaps = 14/849 (2%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 ||||||||||| | |||||||| ||| ||||| |||||||| ||||||| ||||| | Sbjct 1221685 TCGAAGAAATTGGTCTTGCCCTGCAGGGAGATGAGCTCCATCCAGTCGAACGGGTTGACG 1221744 Query 251623 GCATTGTA---CTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCC 251679 | ||||| || |||| || || || || | || | |||||| || || ||||| Sbjct 1221745 ACGTTGTATATCTTCTTG---TGTCCCAGCGCCATGAGCAGGCGGTCGGCGACGAACTCG 1221801 Query 251680 AGATACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAG 251739 | ||||| | ||| || | ||||||||| | | || || | || || ||| Sbjct 1221802 ATGTACTGGCTCATGAGCACGCCGTTCATGCCGACGAGCGCGCAGGGGAGCGCGTCGCAG 1221861 Query 251740 ATGAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGAC 251799 | ||| || ||| || | || || || | || || | || | ||| Sbjct 1221862 ACGAACTCGCGCTCGATGTCGACGGCGTCGGCGACGATCTCGCGGACGCGGGCCTCGTCG 1221921 Query 251800 AGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTCG 251859 |||||| || ||| || || | | || | |||||| ||||||||| Sbjct 1221922 AGCTTGGAGCGGAGGAGGTCGTAGAGTAGGCAGGCGAAGTCGCAGTGCAGGCCCTCGTCG 1221981 Query 251860 CGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAG 251919 || ||||| ||||||||| | || || ||||| | || || ||| |||||||| Sbjct 1221982 CGCGAGATGAGCTCGTTGGAGAAGGTGAGTCCCGGCATGAGGCCGCGCTTCTTGAGCCAG 1222041 Query 251920 AAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAAGG 251979 ||||| ||||| ||||| || ||||| | | |||||||| || | | || || ||| Sbjct 1222042 AAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTCGACGCAGGCGAACGCGACGAGG 1222101 Query 251980 CGCTCAGCAAACGACTTGTCCTGCGACAA--GAACTTCTGTGCCCATGCTGCCTTCTTTC 252037 ||||| || || || | || || | | | | || ||||| | ||||| | Sbjct 1222102 CGCTCCGCGAAGCGCTCG-CCGCCGTCGATCCAGCGCATG-GCCCACTCGGCCTTGCGGC 1222159 Query 252038 CAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGTCCTCGA 252097 || ||||| | || ||||| || || || || | ||| || |||| || Sbjct 1222160 GCACGGCGGGAACCGTCTCGATGGCGCGGAACAGGCGGTCCTTCTCCGCGCCGTCGCGGA 1222219 Query 252098 TGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAACATCTGGT 252157 || || || ||||| || |||||||||||||| |||||| ||| || |||||| Sbjct 1222220 TGTACGTCTCCAGCAGCAGCGAGTACATCTCCGAGTGGATGTTCTCGATGGCGATCTGGA 1222279 Query 252158 AAGCATAGAATAGACGCGCGGAAGGGTCGGTGACTTCCGTGGAAAAGTTGTTTGCAATGT 252217 | | || || ||||| | | | ||| |||| ||| | || | || Sbjct 1222280 ACCCGTAAAAGGCGCGCGCCTCGGCGACCTGGACGTCCGACATGAAGCGGGACGCGAGGT 1222339 Query 252218 TCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTTGATGAAGTGAC 252277 |||||| ||| ||||| ||| | | || |||||| | || | | |||||| || | Sbjct 1222340 TCTCCAGCACGATGCCGTCGGAGGCGGCGAAGAAGGCCAGCACGTGGGAGATGAAATGGC 1222399 Query 252278 GCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTCCTGATTCAGAGG--AACTTC 252335 |||| ||| |||||| | | ||||| | ||| | ||||| || || Sbjct 1222400 GCTCGTCGGGGTTGAGGGCGGCGTCCCAGTGGCGCGCGTC--GGCAGAGAGGTCCACCTC 1222457 Query 252336 TTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACATTGCGAACACATCAGGGTACTT 252395 || | |||||||| | || |||||||||||||| | | | | | |||||||| Sbjct 1222458 CTCGGCGGTCCAGAAGGAGGCTACCGCCTTCTTGTAAAACTCCCAGATCTGCGGGTACTT 1222517 Query 252396 GATTGGGAA 252404 ||| ||||| Sbjct 1222518 GATCGGGAA 1222526 >seq35 Length=2142944 Score = 95.1 bits (104), Expect = 2e-14 Identities = 63/70 (90%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 142499 AGATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTT 142558 ||| |||||| |||||||||||||||||||| || ||||||| || ||||||||||||| Sbjct 75535 AGAGAGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTT 75594 Query 142559 CGAGCCCCAC 142568 |||||||||| Sbjct 75595 CGAGCCCCAC 75604 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 84752 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 84811 Query 142563 CCCCAC 142568 |||||| Sbjct 84812 CCCCAC 84817 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 642246 AGCCCGTCTAGCTCAGTAGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 642305 Query 142563 CCCCAC 142568 |||||| Sbjct 642306 CCCCAC 642311 >seq3 Length=7343539 Score = 95.1 bits (104), Expect = 2e-14 Identities = 61/67 (91%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 ||||||| |||||||||||||||||||| || ||||||| || |||||||||||||||| Sbjct 4913978 TAGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 4914037 Query 142562 GCCCCAC 142568 ||||||| Sbjct 4914038 GCCCCAC 4914044 >seq77 Length=972522 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 79684 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 79743 Query 142563 CCCCAC 142568 |||||| Sbjct 79744 CCCCAC 79749 >seq21 Length=2904860 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 2323838 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 2323779 Query 142563 CCCCAC 142568 |||||| Sbjct 2323778 CCCCAC 2323773 >seq8 Length=4429347 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 2500795 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 2500736 Query 142563 CCCCAC 142568 |||||| Sbjct 2500735 CCCCAC 2500730 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 2820200 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 2820259 Query 142563 CCCCAC 142568 |||||| Sbjct 2820260 CCCCAC 2820265 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 2964494 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 2964553 Query 142563 CCCCAC 142568 |||||| Sbjct 2964554 CCCCAC 2964559 >seq6 Length=4879660 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 43005 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 42946 Query 142563 CCCCAC 142568 |||||| Sbjct 42945 CCCCAC 42940 >seq2 Length=7708084 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 5787268 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 5787209 Query 142563 CCCCAC 142568 |||||| Sbjct 5787208 CCCCAC 5787203 Score = 91.5 bits (100), Expect = 3e-13 Identities = 61/68 (90%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 || ||||| |||||||||||||||||||| || ||||||| || ||||||||||||||| Sbjct 5606702 ATTGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 5606643 Query 142561 AGCCCCAC 142568 |||||||| Sbjct 5606642 AGCCCCAC 5606635 >seq111 Length=380619 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 249757 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 249698 Query 142563 CCCCAC 142568 |||||| Sbjct 249697 CCCCAC 249692 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027828569275625