Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oropetium_20thomaeum_20[genbank_20GCA_5F001182835.1_202015-07-20] 625 sequences; 243,174,629 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq49 98.7 8e-16 seq17 96.9 3e-15 seq57 91.5 1e-13 >seq49 Length=1823295 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| || || |||||||| || | || || ||| ||||| || || ||| Sbjct 157242 GTGGATTCCTTCTGGATGTTGTAGTCCGCAAGGGTGCGGCCATCCTCAAGCTGCTTGCCA 157301 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||||||||| |||||||| || ||||| || ||||| |||||| || Sbjct 157302 GCAAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGAATCTTGGCCTTC 157361 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||| | ||| || || |||| ||| | || ||||| || || || Sbjct 157362 ACATTGTCGATGGTGTCAGAGGACTCAACCTCCAAGGTAATGGTCTTGCCAGTGAGGGTC 157421 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 157422 TTGACGAAGATCTGCAT 157438 Score = 93.3 bits (102), Expect = 4e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 114228 TCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTG 114287 || ||||| || || ||||| ||||||||||||| |||||||| || ||||| || ||| Sbjct 157512 TCCTCAAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTG 157571 Query 114288 TCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACC 114347 || ||||| || | | || | |||||||| ||| || || |||| ||| | Sbjct 157572 TCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCGGAGGACTCAACCTCCAGGGTAATA 157631 Query 114348 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || || || || || || || ||||| ||||||||| Sbjct 157632 GTCTTCCCAGTGAGGGTCTTGACAAAGATCTGCATG 157667 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/197 (71%), Gaps = 1/197 (1%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| || | || || ||| ||||| || || || Sbjct 157698 GTGGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTGCGGCCATCCTCAAGCTGCTTGCCG 157757 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| ||||||||||||| |||||||| || ||||| || ||||| |||||| || Sbjct 157758 GCGAAGATGAGACGCTGCTGGTCCGG-GGGATGCCCTCCTTGTCCTGAATCTTGGCCTTC 157816 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||| | ||| || || || | ||| | || ||||| || || || Sbjct 157817 ACGTTGTCGATGGTGTCCGAGGACTCCACCTCAAGGGTGATGGTCTTGCCAGTAAGGGTC 157876 Query 114366 TTTACAAAAATCTGCAT 114382 || || ||||||||||| Sbjct 157877 TTGACGAAAATCTGCAT 157893 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| || ||||||||||| || || ||||| ||| || || || || || Sbjct 157014 GTGGATTCCTTCTGAATGTTGTAGTCCGCCAGGGTACGTCCATCCTCCAGCTGCTTGCCT 157073 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || | || |||||||| |||||||| || ||||| || ||||| ||||| || Sbjct 157074 GCAAAAATCAGACGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTC 157133 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| | || || || |||| ||| | || || || || || || Sbjct 157134 ACATTGTCAATGGTGTCTGAAGACTCTACCTCCAAGGTGATAGTCTTCCCAGTGAGGGTC 157193 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 157194 TTGACAAAGATCTGCAT 157210 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| ||| | || || || || || || || ||| Sbjct 158153 GTGGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCA 158212 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| ||||||||||||| |||||||| || ||||| || ||||| ||||| || Sbjct 158213 GCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTC 158272 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||| || | ||| || || || | ||| | || |||||||| || || Sbjct 158273 ACGTTGTCAATGGTATCCGAGGACTCCACCTCGAGGGTTATGGTCTTGCCGGTAAGGGTC 158332 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 158333 TTAACGAAGATCTGCAT 158349 Score = 82.4 bits (90), Expect = 6e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 114228 TCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTG 114287 || ||||| || || || ||| ||||||||||||| |||||||| || ||||| || ||| Sbjct 157967 TCCTCAAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTG 158026 Query 114288 TCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACC 114347 || |||||| || | | || | |||||| | ||| || || || | || | Sbjct 158027 TCCTGAATCTTGGCCTTCACATTGTCGATGGTGTCCGAGGACTCCACCTCAAGAGTGATG 158086 Query 114348 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || ||||| || || || || || || |||||||| Sbjct 158087 GTCTTGCCAGTAAGGGTCTTGACGAAGATCTGCAT 158121 >seq17 Length=3182705 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 114185 CGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACC 114244 ||| || || || || ||||| || || | ||||| ||| ||||| || || || Sbjct 3114809 CGTGGACTCCTTCTGGATGTTATAGTCAGCAAGGGTACGCCCATCCTCAAGCTGCTTGCC 3114750 Query 114245 AGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTT 114304 || | ||||||| | ||| ||||||||||| ||||| || ||||| |||||| || Sbjct 3114749 AGTGAAGATGAGCCTCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGAATCTTGGCCTT 3114690 Query 114305 TAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGT 114364 | | || | |||||| | ||| || || |||| ||| | || |||||||| || || Sbjct 3114689 GACATTGTCGATGGTGTCAGAGGACTCCACCTCCAGGGTGATGGTCTTGCCGGTGAGGGT 3114630 Query 114365 TTTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 3114629 CTTGACGAAGATCTGCAT 3114612 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || | ||| | || || ||||| |||||||||||||| Sbjct 3005712 ATACCACCACGAAGACGGAGCACCAGATGAAGGGTGGACTCTTTCTGAATGTTGTAATCA 3005771 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||||| ||| || || || || |||||| ||||||| | ||| |||||||| Sbjct 3005772 GCAAGGGTACGTCCATCCTCGAGCTGCTTGCCAGCGAAGATGAGCCTCTGCTGGTCCGGG 3005831 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || ||||| || ||||| ||||| || | | || | |||||| | || || Sbjct 3005832 GGGATGCCCTCCTTGTCTTGGATCTTGGCCTTCACGTTGTCGATGGTGTCAGATGACTCT 3005891 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || || | ||| | || || || || || || || || || ||||||||| Sbjct 3005892 ACCTCAAGGGTGATGGTCTTCCCAGTGAGGGTCTTGACGAAGATCTGCATG 3005942 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| || | ||||| || ||||| || || || Sbjct 3005973 GTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTACGCCCGTCCTCAAGCTGCTTGCCG 3006032 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||| | ||| ||||||||||| ||||| || ||||| ||||| || Sbjct 3006033 GCAAAGATGAGCCTCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 3006092 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||| | ||| || || || | ||| | || |||||||| || || Sbjct 3006093 ACGTTGTCGATGGTGTCAGAGGACTCCACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTC 3006152 Query 114366 TTTACAAAAATCTGCATGGCT 114386 || || || ||||||||| || Sbjct 3006153 TTGACGAAGATCTGCATGCCT 3006173 >seq57 Length=1649376 Score = 91.5 bits (100), Expect = 1e-13 Identities = 141/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATC-GCTCATAGTACGAGAATCTTCAAGTTGTTTACC 114244 || || || || || |||||||| || ||| | ||||| |||||| || || || || Sbjct 1449846 GTCGACTCCTTCTGTATGTTGTAGTCAGCT-AGGGTACGGCCATCTTCGAGCTGCTTCCC 1449788 Query 114245 AGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTT 114304 ||| ||||||| | ||| ||||||||||| |||||||| ||||| ||||| || Sbjct 1449787 AGCAAAGATGAGCCTCTGCTGGTCCGGAGGGATGCCTTCCTTGTCCTGGATCTTGGCCTT 1449728 Query 114305 TAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGT 114364 | | |||| ||||| | | || || |||| || | || ||||| || || || Sbjct 1449727 AACATTGTCAATTGTGTCAGAGCTCTCAACCTCCAAAGTGATTGTCTTGCCTGTAAGGGT 1449668 Query 114365 TTTTACAAAAATCTGCATG 114383 || ||||| ||||||||| Sbjct 1449667 CTTAACAAAGATCTGCATG 1449649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420131199757500