Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oropetium_20thomaeum_20[genbank_20GCA_5F001182835.1_202015-07-20] 625 sequences; 243,174,629 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq23 352 5e-92 >seq23 Length=2780208 Score = 352 bits (390), Expect = 5e-92 Identities = 612/873 (70%), Gaps = 25/873 (3%) Strand=Plus/Minus Query 42284 GATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGC 42343 |||| || ||| | | |||||| | |||||||||||| |||| ||||||||| Sbjct 1222521 GATCAAGTACCCGCAGATCTGGGAGTTTTACAAGAAGGCGGTAGCCTCCTTCTGGACCGC 1222462 Query 42344 CGAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGA-GTCACTGTCTGAGAACGAAA 42402 ||||||| | ||||| | ||| || | |||||| | | | || | ||| Sbjct 1222461 CGAGGAGGTGGACCTCTCTGCCGACGCGCGCCACTGGGACGCCGCCCTCA-ACCCCGACG 1222403 Query 42403 AGTT---TTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATG 42459 || |||| || || | |||||||||||||||||||| |||||||| || | Sbjct 1222402 AGCGCCATTTCATCTCCCACGTGCTGGCCTTCTTCGCCGCCTCCGACGGCATCGTGCTGG 1222343 Query 42460 AGAACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACG 42519 ||||||| || || | |||||| || || ||| | ||||||||| ||| |||| Sbjct 1222342 AGAACCTCGCGTCCCGCTTCATGTCGGACGTCCAGGTCGCCGAGGCGCGCGCCTTTTACG 1222283 Query 42520 GCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGT 42579 | |||||||| ||||| |||||| | ||||| ||| ||||| | ||||| | |||| Sbjct 1222282 GGTTCCAGATCGCCATCGAGAACATCCACTCGGAGATGTACTCGCTGCTGCTGGAGACGT 1222223 Query 42580 ACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCA 42639 |||||| || || ||| || | |||||| ||||| |||||| | ||| | Sbjct 1222222 ACATCCGCGACGGCGCGGAGAAGGACCGCCTGTTCCGCGCCATCGAGACGGTTCCCGCCG 1222163 Query 42640 TCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGA-CGCAACGTTCGGC 42698 | ||||| || ||||| | ||||||||| | ||| ||| |||| Sbjct 1222162 TGCGCCGCAAGGCCGAGTGGGCCATGCGCTGGATCGACGGCGGCGAGCGC----TTCGCG 1222107 Query 42699 GAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCC 42758 ||| | || || || || || ||||||||||||||||||||||||| ||||| | || Sbjct 1222106 GAGCGCCTCGTCGCGTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCCTTCTGCGCC 1222047 Query 42759 ATCTTCTGGCTCAAGCAGAA-GGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCAT 42817 ||||||||||||||| || || || ||||| |||||||||||||| ||||| ||||| Sbjct 1222046 ATCTTCTGGCTCAAGAAGCGCGGCCTC-ATGCCGGGACTCACCTTCTCCAACGAGCTCAT 1221988 Query 42818 CAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAG 42877 | | |||||||| ||||| | ||||| |||||||| || | ||| || |||| | Sbjct 1221987 CTCGCGCGACGAGGGCCTGCACTGCGACTTCGCCTGCCTACTCT--ACGA-CCTCCTCCG 1221931 Query 42878 GCACAAGCCCTCGA--AGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAG 42935 |||| ||||| ||| || ||||| | ||| || | || ||||| || |||||| Sbjct 1221930 CTCCAAG--CTCGACGAGGCCCGCGTCCGCGAGATCGTCGCCGACGCCGTCGACATCGAG 1221873 Query 42936 AAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATG 42995 |||||| || | |||| ||| | || |||||||||||| || |||||| Sbjct 1221872 CGCGAGTTCGTCTGCGACGCGCTCCCCTGCGCGCTCGTCGGCATGAACGGCGTGCTCATG 1221813 Query 42996 TGCAAGTACATCCAGTACGTCGCCGACCATCTCCT-GTGCCAGATGGGTCTCAGCCGCCT 43054 || |||||||| ||| ||||||||||| || || || | | |||| | || | Sbjct 1221812 AGCCAGTACATCGAGTTCGTCGCCGACCGCCTGCTCATGGC-GCTGGGACACAAGAAGAT 1221754 Query 43055 CTACAACACGCCGT--GCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACC 43112 |||| ||| ||| ||| ||||||| |||||| |||||| || ||||||||||| Sbjct 1221753 ATACA--ACGTCGTCAACCCGTTCGACTGGATGGAGCTCATCTCCCTGCAGGGCAAGACC 1221696 Query 43113 AACTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145 || || |||||||||||||||| ||| |||||| Sbjct 1221695 AATTTCTTCGAGAAGCGCGTCGGCGAGTACCAG 1221663 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944331822350000