Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oropetium_20thomaeum_20[genbank_20GCA_5F001182835.1_202015-07-20] 625 sequences; 243,174,629 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq8 98.7 8e-16 seq5 93.3 3e-14 seq17 91.5 1e-13 seq57 89.7 4e-13 seq49 87.8 1e-12 seq165 84.2 2e-11 seq4 84.2 2e-11 seq7 82.4 6e-11 >seq8 Length=4429347 Score = 98.7 bits (108), Expect = 8e-16 Identities = 155/221 (70%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || |||||||| || ||||| ||||||||| | |||||| || |||| ||| Sbjct 2522481 AGGCGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGACGTTGTAGTCGGCCAGCGTGCGC 2522422 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 ||||| |||| ||||| |||||||| |||||||||||||| ||| ||| | || || Sbjct 2522421 TCGTCCTCCAGCTGCTTCCCGGCAAAGATCAGGCGCTGCTGCTCCGGCGGGATACTTTCC 2522362 Query 34030 TTGTCCATAATTTTTTGCTT---AATGGAACTCACACTATCAGTAGATTCGCATTCGACC 34086 |||||| || ||| ||| | ||| || |||| | ||| |||| | Sbjct 2522361 TTGTCCTGGATCTTTGCCTTGACATTGG---CGACGGTATCGCCGGTCTCGACCTCGAGC 2522305 Query 34087 GTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || | || |||||| | || || ||||| ||||| ||||| Sbjct 2522304 GTCACCGTCTTTCCGATCAGCGTCTTCACGAAGATCTGCAT 2522264 >seq5 Length=5556497 Score = 93.3 bits (102), Expect = 3e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || || ||||| || ||||| ||||||||| ||||||||||| |||| ||| Sbjct 4050152 AGGCGGAGGACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCGGCCAGCGTGCGC 4050093 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| |||| ||||| ||||| || || || |||||||| ||| ||| |||| ||| Sbjct 4050092 CCGTCCTCCAGCTGCTTCCCGGCGAAGATGAGCCGCTGCTGGTCCGGCGGGACGCCCTCC 4050033 Query 34030 TTGTCC 34035 |||||| Sbjct 4050032 TTGTCC 4050027 >seq17 Length=3182705 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||||||||| ||||||||||| || || ||| ||||||||| |||||||| || || Sbjct 3006627 CCTCCTCTCAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCG 3006686 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | ||| |||| || | |||||||| || || || || | |||||| ||| || Sbjct 3006687 AGGGTACGCCCGTCCTCGAGCTGCTTGCCAGCGAAGATAAGCCTCTGCTGGTCCGGGGGG 3006746 Query 34021 ACGCTCTCTTTGTCC 34035 | || ||| |||||| Sbjct 3006747 ATGCCCTCCTTGTCC 3006761 Score = 89.7 bits (98), Expect = 4e-13 Identities = 103/136 (76%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| || || || |||||||| || || ||| |||||||||||||||||| || | | Sbjct 3114610 CCTCCCCTGAGGCGGAGCACCAGGTGTAGGGTGGACTCCTTCTGAATGTTGTAGTCAG-C 3114552 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || ||| ||| |||| || | |||||||| || || || || | |||||| ||| || Sbjct 3114551 AAGTGTACGCCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGCCTCTGCTGGTCCGGGGG 3114492 Query 34020 CACGCTCTCTTTGTCC 34035 | || ||| |||||| Sbjct 3114491 GATGCCCTCCTTGTCC 3114476 Score = 86.0 bits (94), Expect = 5e-12 Identities = 102/136 (75%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || || || || |||||||| || || ||| ||||||||| |||||||| || || Sbjct 3005943 CCACCCCTGAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGC- 3006001 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || || ||| |||| || | |||||||||||||| || || | |||||| ||| || Sbjct 3006002 AAGGGTACGCCCGTCCTCAAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCCGGAGG 3006061 Query 34020 CACGCTCTCTTTGTCC 34035 | || ||| |||||| Sbjct 3006062 GATGCCCTCCTTGTCC 3006077 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| || || || ||||| || ||||| ||| ||||||||| |||||||| || ||| Sbjct 3006171 CCTCCCCTGAGGCGGAGCACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCC 3006230 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | ||| |||| |||| ||||||||||| || || || | |||||| ||| || Sbjct 3006231 AGGGTGCGCCCGTCCTCCAGCTGCTTGCCGGCGAAGATAAGCCTCTGCTGGTCCGGGGGG 3006290 Query 34021 ACGCTCTCTTTGTCC 34035 | | ||| |||||| Sbjct 3006291 ATACCCTCCTTGTCC 3006305 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| || || || ||||| || ||||| ||| ||||||||| |||||||| || ||| Sbjct 3006399 CCTCCCCTGAGGCGGAGCACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCC 3006458 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | ||| |||| |||| ||||||||||| || || || | |||||| ||| || Sbjct 3006459 AGGGTGCGCCCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGCCTCTGCTGGTCCGGGGGG 3006518 Query 34021 ACGCTCTCTTTGTCC 34035 | | ||| |||||| Sbjct 3006519 ATACCCTCCTTGTCC 3006533 >seq57 Length=1649376 Score = 89.7 bits (98), Expect = 4e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || ||||| || |||||||| ||| |||||||| ||||||||||||||||| ||| Sbjct 1450779 AGGCGCAGGACAAGATGAAGAGTGGATTCCTTCTGGATGTTGTAATCTGCCAAGGTACGC 1450720 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | || |||| ||||| || |||||||| || | ||||||||| Sbjct 1450719 CCATCCTCCAGCTGCTTCCCAGCAAATATAAGCCTCTGCTGATC 1450676 Score = 84.2 bits (92), Expect = 2e-11 Identities = 109/151 (72%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || ||||| |||||||| || || || || ||||||||| ||||||||||| ||| Sbjct 1449648 CCACCCCTCAGACGCAGCACAAGGTGGAGAGTAGACTCCTTCTGGATGTTGTAATCAGCC 1449589 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 ||| || | || || | |||||||| ||||| || || | ||||||||| || Sbjct 1449588 AATGTACGGCCATCTTCTAGCTGCTTGCCAGCAAAAATGAGCCTCTGCTGATCTGGGGGG 1449529 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAA 34051 | || ||| || ||| ||| || ||||| Sbjct 1449528 ATGCCCTCCTTATCCTGAATCTTGGCCTTAA 1449498 >seq49 Length=1823295 Score = 87.8 bits (96), Expect = 1e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || |||||||| ||||| ||| ||||||||||||||||| || |||| || Sbjct 156993 AGACGAAGCACCAGGTGAAGAGTGGATTCCTTCTGAATGTTGTAGTCCGCCAGGGTACGT 157052 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 | || |||| |||||||| ||||| ||||| |||||||| ||| || | || ||| Sbjct 157053 CCATCCTCCAGCTGCTTGCCTGCAAAAATCAGACGCTGCTGGTCCGGTGGGATGCCCTCC 157112 Query 34030 TTGTCC 34035 |||||| Sbjct 157113 TTGTCC 157118 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || || |||| || ||||||||||| || ||| ||||||||||||||||| || Sbjct 1214216 CCACCCCTGAGCCTTAGGACCAGATGAAGTGTCGACTCTTTCTGAATGTTGTAATCAGCT 1214275 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 ||| || | | || ||||||||||| || || || ||||| | ||||| || || Sbjct 1214276 AATGTTCTCCCATCTTCCAATTGCTTACCAGCGAAAATCAGCCTTTGCTGGTCTGGGGGG 1214335 Query 34021 ACGCTCTCTTTGTCC 34035 | || ||| |||||| Sbjct 1214336 ATGCCCTCCTTGTCC 1214350 >seq165 Length=58862 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || ||||||||||| || ||| ||||||||| |||||||| || || | || Sbjct 23335 AGGCGGAGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGG 23394 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 | || || | ||||||||||| || || ||||||||||| ||| ||| | || ||| Sbjct 23395 CCATCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCC 23454 Query 34030 TTGTCC 34035 |||||| Sbjct 23455 TTGTCC 23460 >seq4 Length=5694366 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || ||||||||||| || ||| ||||||||| |||||||| || || | || Sbjct 3329482 AGGCGGAGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGG 3329423 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 | || || | ||||||||||| || || ||||||||||| ||| ||| | || ||| Sbjct 3329422 CCATCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCC 3329363 Query 34030 TTGTCC 34035 |||||| Sbjct 3329362 TTGTCC 3329357 >seq7 Length=4730600 Score = 82.4 bits (90), Expect = 6e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || || || || || || ||| ||||||||| |||||||| || |||| ||| Sbjct 1687745 AGGCGGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTACGC 1687804 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014 |||| |||| |||||||||||||| ||||| |||||||| ||| Sbjct 1687805 CCGTCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCC 1687849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397059375501250