Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oropetium_20thomaeum_20[genbank_20GCA_5F001182835.1_202015-07-20] 625 sequences; 243,174,629 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq23 129 1e-24 >seq23 Length=2780208 Score = 129 bits (142), Expect = 1e-24 Identities = 553/867 (64%), Gaps = 8/867 (1%) Strand=Plus/Minus Query 242875 TTCCCCATCCAGTATCCGGATATGTGGGATATGTATAAGAAGGCAGTGGCAACCTTTTGG 242934 ||||| ||| |||| ||| | || ||||| | || |||||||| || || |||| ||| Sbjct 1222526 TTCCCGATCAAGTACCCGCAGATCTGGGAGTTTTACAAGAAGGCGGTAGCCTCCTTCTGG 1222467 Query 242935 ACCACCGAGGAAGTT--CCTCTGAACGCAGACGTCGTCGACTGGCGCGAGAAACTCAATG 242992 ||| ||||||| || ||||| || |||| | ||||| || ||||| Sbjct 1222466 ACCGCCGAGGAGGTGGACCTCTCT--GCCGACGCGCGCCACTGGGACGCCGCCCTCAACC 1222409 Query 242993 ACGACGAACGTCATTTCATCAAACACATTCTAGGTTTTTTCGCAGGCTCCGATGGTATTG 243052 |||||| || ||||||||| ||| | || | || ||||| | |||||| || || | Sbjct 1222408 CCGACGAGCGCCATTTCATCTCCCACGTGCTGGCCTTCTTCGCCGCCTCCGACGGCATCG 1222349 Query 243053 TGATGGAAAATCTGCAGACCAACTTTAGTGT-GGAAGTAACGGTTCCAGAGGCACGGCAA 243111 || |||| || || | || ||| | ||| ||| || ||| | ||||| || Sbjct 1222348 TGCTGGAGAACCTCGCGTCCCGCTTCA-TGTCGGACGTCCAGGTCGCCGAGGCGCGCGCC 1222290 Query 243112 TTTTATGCTTACCAAACATTCAACGAATCTATCCATTCTGAACAATATGCTCTTCTTATC 243171 ||||| | | ||| | || ||| ||||| || || || | || || | Sbjct 1222289 TTTTACGGGTTCCAGATCGCCATCGAGAACATCCACTCGGAGATGTACTCGCTGCTGCTG 1222230 Query 243172 GACGCGCTTATTTCAGATGAACAAGAGCGAAACGAGCTTTTCGACGCCATCGAAAACATT 243231 || || || || | ||| || || ||| ||||||||| | || Sbjct 1222229 GAGACGTACATCCGCGACGGCGCGGAGAAGGACCGCCTGTTCCGCGCCATCGAGACGGTT 1222170 Query 243232 CCGGCGGTTCATAACAAGGCAAAATGGGCTCAGAAGTGGCTAGAACCCGGTAAATCATTT 243291 || || || | |||||| | ||||| | ||| | || ||| | || Sbjct 1222169 CCCGCCGTGCGCCGCAAGGCCGAGTGGGCCATGCGCTGGATCGACGGCGGCGAGCGCTTC 1222110 Query 243292 GCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGC 243351 || ||||| |||||||| | | ||||| || || || | || || || |||||| Sbjct 1222109 GCGGAGCGCCTCGTCGCGTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCCTTCTGC 1222050 Query 243352 GCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTC 243411 |||||||| ||||| ||| || | ||||| || ||| | || |||||| || Sbjct 1222049 GCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGACTCACCTTCTCCAACGAGCTC 1221990 Query 243412 ATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAGCTCCAG 243471 ||| |||||||||||||| ||| | |||| || | || |||| Sbjct 1221989 ATCTCGCGCGACGAGGGCCTGCACTGCGACTTCGCCTGCCTACTCTACGACCTCCTCCGC 1221930 Query 243472 AACAAGCTACCATTCGAAACG-GTCAAACAAATCATCACAGAAGCAGTTGAAAACGAAAA 243530 |||||| | | | || ||| | ||| || | || || || || | ||| Sbjct 1221929 TCCAAGCT-CGACGAGGCCCGCGTCCGCGAGATCGTCGCCGACGCCGTCGACATCGAGCG 1221871 Query 243531 GGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTCATGGG 243590 || ||| | |||||||| | || ||| ||| | ||||||||| | |||||| | Sbjct 1221870 CGAGTTCGTCTGCGACGCGCTCCCCTGCGCGCTCGTCGGCATGAACGGCGTGCTCATGAG 1221811 Query 243591 ACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTGTA 243650 ||||||||||| ||||| ||||||||| | |||| ||||| || | |||| | || Sbjct 1221810 CCAGTACATCGAGTTCGTCGCCGACCGCCTGCTCATGGCGCTGGGACACAAGAAGATATA 1221751 Query 243651 CAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTT 243710 |||| | ||||| || | || ||||||||||| || || || || || || || || Sbjct 1221750 CAACGTCGTCAACCCGTTCGACTGGATGGAGCTCATCTCCCTGCAGGGCAAGACCAATTT 1221691 Query 243711 CTTCGAAAAGCGTGTCAGTGATTATCA 243737 |||||| ||||| ||| | || || || Sbjct 1221690 CTTCGAGAAGCGCGTCGGCGAGTACCA 1221664 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102871168343750