Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oropetium_20thomaeum_20[genbank_20GCA_5F001182835.1_202015-07-20] 625 sequences; 243,174,629 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq23 141 1e-28 seq58 113 5e-20 seq49 98.7 1e-15 >seq23 Length=2780208 Score = 141 bits (156), Expect = 1e-28 Identities = 305/452 (67%), Gaps = 8/452 (2%) Strand=Plus/Plus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 ||| || || || |||||||||||||| || ||||| || | || | ||| |||||| Sbjct 1221666 GTACTCGCCGACGCGCTTCTCGAAGAAATTGGTCTTGCCCTGCAGGGAGATGAGCTCCAT 1221725 Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCAAAT--TGTTGGCACCCCAATCTGTTTGAGGAGA 125875 | || || ||||| ||| | || | ||| ||| | | |||| || Sbjct 1221726 CCAGTCGAACGGGTTGACGACGTTGTATATCTTCTTGTGTCCC--AGCGCCATGAGCAGG 1221783 Query 125876 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTA 125935 || || | |||| |||| ||||||| ||| | | |||||| |||| ||| Sbjct 1221784 CGGTCGGCGACGAACTCGATGTACTGGCTCATGAGCACGCCGTTCATGCCGACGAGCGCG 1221843 Query 125936 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCG 125995 || ||||||||||| ||| |||| | ||| || || ||||| || ||||| || Sbjct 1221844 CAGGGGAGCGCGTCGCAGACGAACTCGCGCTCGATGTCGACGGCGTCGGCGACGATCTCG 1221903 Query 125996 TGAATGGTGTCCACCCCAGGTCTATTGCGCA--AAGTCTTGAAGAGTTCCACGGCAAACT 126053 | | | | || | | | | ||| | | ||| | ||||| ||| || | Sbjct 1221904 CGGACGCGGGCCTCGTCGAGCTTGGAGCGGAGGAGGTCGT--AGAGTAGGCAGGCGAAGT 1221961 Query 126054 CTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGA 126113 | ||| || |||||||| || |||||||| || || |||||| ||||| ||||||| Sbjct 1221962 CGCAGTGCAGGCCCTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGTGAGTCCCGGCATGA 1222021 Query 126114 GACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCA 126173 | || |||||||| | |||||| || || || || || |||||||||||||| ||||| | Sbjct 1222022 GGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTCGA 1222081 Query 126174 CACACGCGAACGCAAAGAGACGCTCAGCAAAG 126205 | || |||||||| | ||| ||||| || ||| Sbjct 1222082 CGCAGGCGAACGCGACGAGGCGCTCCGCGAAG 1222113 >seq58 Length=1564795 Score = 113 bits (124), Expect = 5e-20 Identities = 279/419 (67%), Gaps = 6/419 (1%) Strand=Plus/Plus Query 10775 ACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATG 10834 ||||||| || |||||||| | ||||| || || || || ||| |||| ||| Sbjct 1272569 ACGGTGACCTGCCGATCAAACCTCCCTGGCCGTAGAAGAGCCGAGTCCAGGACATCGGGC 1272628 Query 10835 CGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTC 10894 | ||| || || |||| || | || ||| | | | | ||||| |||||||| ||| Sbjct 1272629 CTGTTGGTGGCAGCGAGCACGATGACGCCACTGTTGCCTGCGAAGCCGTCCATCTCCGTC 1272688 Query 10895 AAGAGTTGATTGATGGTTTGTTCGCGTTCATCATT--CGCGGGCATACCACCCGCACTGC 10952 | || || || ||||| || || | || || || | | || || | |||| | Sbjct 1272689 AGCAGCTGGTTAATGGTCTGCTCCCTCTCGTCGTTTCCACCACCAAGCC--CAGCACCAC 1272746 Query 10953 GTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCACGGG 11012 | || | |||||||| ||||| ||||| ||||| || || || || || | || Sbjct 1272747 GCTGTCTGCCGACGGCATCAATCTCATCAATGAAGACAATGCAAGGCGCCTTGGCCTTGG 1272806 Query 11013 CAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAAT 11072 | || |||| || | ||| || |||||||||||| || || | || || || | Sbjct 1272807 CCTTCTCGAAGAGGTCCCTGACCCTGGAGGCACCGACACCGACGAAGAGCTCGACGAACT 1272866 Query 11073 TGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGA 11132 || |||| || || ||| || ||| || || || |||| ||| || ||||||| Sbjct 1272867 CGGACGCGGCGCAGGAGAAGAACGGCACGCCGGCCTCCCCGGCGACGGCACGCGCGAGGA 1272926 Query 11133 GGGTCTTCCCCGTCCCAGGTTTCCCTGCGAGAAGGGCACCAC-GTGGGATCCTGGCACC 11190 | ||||| ||||||||||| || |||| | |||||| | ||||||| |||| || Sbjct 1272927 GAGTCTTACCCGTCCCAGGCGGACCGACGAGCA-GGCACCCCTTTGGGATCTTGGCTCC 1272984 >seq49 Length=1823295 Score = 98.7 bits (108), Expect = 1e-15 Identities = 223/330 (68%), Gaps = 8/330 (2%) Strand=Plus/Minus Query 10826 ATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCC 10885 |||||| | ||| || || || || |||| ||| || || | ||||| |||||| Sbjct 586619 ATATCAGCTCTGTTAGTGGCAGCAATAACAATGATTCCAGTGTTCCCCTCAAAACCATCC 586560 Query 10886 ATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATT--CGCGGGC-ATACCA 10942 |||||||||| |||||||| | ||| || || | ||||||||| | | | || | Sbjct 586559 ATCTCAGTCAGAAGTTGATTCAGGGTCTGCTCCCTTTCATCATTTCCACCACCGAT---A 586503 Query 10943 CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGA 11002 |||| | | |||| | || || || || |||||||| | || || || || ||| | Sbjct 586502 CCCGTTCCTCTTTGCCTTCCAACAGCATCGATTTCATCAACAAACACTATGCAAGGTGCA 586443 Query 11003 TTTTCACGGGCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATT 11062 || || ||| || ||| | ||| || || | ||||||||||| |||||||| Sbjct 586442 TTCTCCTTGGCCTTTTTAAAAAGATCACGAACCCGGGAAGCACCGACACCAACAAACATC 586383 Query 11063 TCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGC 11121 |||||||| | | | | | |||| || ||| || || | ||| || || || || Sbjct 586382 TCCACAAACTCAGATCCCG-ATATTGAGAAGAAAGGCACTCCAGCTTCTCCTGCAATTGC 586324 Query 11122 TCGGGCGAGGAGGGTCTTCCCCGTCCCAGG 11151 |||||| | ||||| |||||||| || Sbjct 586323 CTTGGCGAGCAAAGTCTTACCCGTCCCGGG 586294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597348933175000