Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oropetium_20thomaeum_20[genbank_20GCA_5F001182835.1_202015-07-20] 625 sequences; 243,174,629 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq15 554 6e-153 seq72 145 9e-30 >seq15 Length=3529114 Score = 554 bits (614), Expect = 6e-153 Identities = 735/1015 (72%), Gaps = 4/1015 (0%) Strand=Plus/Plus Query 6263 AGAGCGTTGCCTCTTGGCAATACTTCTTCAGGAAATACAAAGTTTTCATGTGGTTGATCC 6322 |||||||| || | ||| | || || ||||| |||| || |||||||| || |||||| Sbjct 3060853 AGAGCGTTTCCACGTGGTAGAACCTCCTCAGGGAATATAAGATTTTCATGAGGCTGATCC 3060912 Query 6323 ACTGGTGCCATCCAGGCACGTAGACCTTCATTCAATAGGATGTTCTTGGTATAGAACGTC 6382 | ||||||||| ||||| | ||| || || || || || || ||||| ||||| ||| Sbjct 3060913 TGAGCTGCCATCCACGCACGAATACCCTCGTTTAAAAGAATATTTTTGGTGTAGAAAGTC 3060972 Query 6383 TCGAACTCTGGATCCTCCGCTGCTCTGATCTCTTGTGAAACAAAGTCATAAGCTCTAAGG 6442 || || || ||||| |||||||| | ||| || || ||||| |||||||| || | ||| Sbjct 3060973 TCAAATTCAGGATCTTCCGCTGCACGGATTTCCTGGGAAACGAAGTCATAGGCACGTAGG 3061032 Query 6443 TTAAGTGCAAGACCAATAATACCAATGCTAGAGGTCCAAAGACCCATAACAGGAACAAAC 6502 || || || || |||| | ||||| | |||| | ||| | || || ||||| Sbjct 3061033 TTCAGAGCCAGGCCAACTACGCCAATAGCACTCATCCATAAACCGGTGACGGGTACAAAT 3061092 Query 6503 AGCATAAAGAAATGTAGCCAACGCTTATTGCTGAAGGCGATACCAAAGATCTGAGACCAG 6562 |||||||||||||||| |||||| |||||| || || | ||||||||| || ||||| Sbjct 3061093 AGCATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACACCAAAGATTTGGGACCAA 3061152 Query 6563 AAACGATTAGCCGTGACCATCGAATAGGTCTCCTCTTCTTGTGTAGGCTCAAACGCCTTG 6622 || || ||||| |||||||| ||||| || || || |||| || || | ||| || | Sbjct 3061153 AAGCGGTTAGCGGTGACCATTGAATAAGTTTCTTCCGCTTGAGTGGGGTTAAAAGCTCGG 3061212 Query 6623 AAAGTATTTGATTGTTCACCATCTTCAAACAAAGTATTCTCTACAGTAGCACCGTGAATA 6682 || ||||||| ||||||||||| || | ||| || ||||||||||| || |||||| Sbjct 3061213 AAGGTATTTGCACCATCACCATCTTCGAATAGAGTGTTTTCTACAGTAGCCCCATGAATA 3061272 Query 6683 GCACAGAGCAATGCTCCACCTAAGATACCTGCTACACCCATCATATGAAACGGGTTGAGC 6742 || || || | ||| ||||||| | || || || |||||||||||||| ||||| | | Sbjct 3061273 GCGCATAGGAGAGCTGCACCTAATACTCCGGCAACTCCCATCATATGAAAGGGGTTCAAC 3061332 Query 6743 GTCCAGTTGTGGAAGCCCTGTAGGAAGAGTAAGAAGCGGAATATCGCTGCAACACCAAAC 6802 ||||| || || || || || | ||| || | ||| || ||||| ||||| || ||||| Sbjct 3061333 GTCCAATTATGAAATCCTTGGAAGAAAAGGATGAATCGAAATATAGCTGCTACGCCAAAA 3061392 Query 6803 GACGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATACATGAGAAAGACAGACACAAAG 6862 ||| ||||||||||||| || ||||| || ||||| || || || || || ||||| Sbjct 3061393 CTCGGTGCAAAGAACCAACCAGATTGTCCCAGTGGATAAATAAGGAATACGGAAACAAAA 3061452 Query 6863 ACAGCAATGGGACCAGAAAACGCGATTGCATTGTAGGGACGAATACCGACTAGACGT-GC 6921 ||||| || |||||||| || | |||||||| || || || | | || |||| | || Sbjct 3061453 ACAGCGATTGGACCAGAGAATGAAATTGCATTATAAGGCCGCA-ATTGAACAGACCTAGC 3061511 Query 6922 GATCTCAAACTGCCGAAGCATGAAACCTATAAGGGCAAAGGCTCCGTGGAGCGCCACAAA 6981 | ||||| || || | |||||||||||| || ||||| || || ||||| || ||||| Sbjct 3061512 AAGTTCAAATTGACGTAACATGAAACCTATTAGTGCAAAAGCCCCATGGAGAGCGACAAA 3061571 Query 6982 AGGCCATAGTCCCCCAAGTTGGAGCCAGCGGACGAAATCTCCCTGAGCTTCTGGACCCCA 7041 || ||| || ||||| | |||| ||| || ||||| || || ||||| || ||||| Sbjct 3061572 AGTCCACAGACCCCCTAATTGGCACCAACGAGTAAAATCCCCTTGTGCTTCCGGTCCCCA 3061631 Query 7042 TAGAAGAAGTAGGGAATGTCCGAGAGCGTCAGCAGGAGTTGATACAGCAGCAGTAAGGAA 7101 ||| || | | || ||| | | | | |||||| || || || || || || | ||| Sbjct 3061632 TAGTAGCAACAAAGAGTGTGCTAAACTATTAGCAGGGGTGGAAACTGCCGCCGTTAAGAA 3061691 Query 7102 ATTACATCCCTCAAGATACGAAGAAGCAATCCCGTGAGTGTACCAGCTCGTGACGAAAGT 7161 ||| || || || | ||| ||| ||| | || || || ||||| || || ||||| Sbjct 3061692 ATTGCAACCTTCCAAATAGGAACTAGCCAATCCATGGGTATACCAAGAAGTTACAAAAGT 3061751 Query 7162 TGTGCCCGTGAGCCAACCGCCCAGTGCCAGGTAAGCAGTAGGGAACAGAAGAAGACCTGA 7221 || || || | |||||| || | || | |||||| ||| || || | || || || Sbjct 3061752 AGTCCCTGTAAACCAACCCCCTAAAGCGAAATAAGCACAAGGAAAGAGCAATAGGCCGGA 3061811 Query 7222 CCAACCAACAAAAACGAACCTATCAC-GCTTAAGCCAGTCATCGAGTACATCAAA 7275 ||| || ||||||||||| | || | | ||| |||||| || | | |||||| Sbjct 3061812 CCATCCTACAAAAACGAAACGGTCCCTTCGTAA-CCAGTCGTCCATAATATCAAA 3061865 >seq72 Length=1231634 Score = 145 bits (160), Expect = 9e-30 Identities = 192/264 (73%), Gaps = 2/264 (1%) Strand=Plus/Minus Query 6749 TTGTGGAAGCCCTGTAGGAAGAGTAAGAAGCGGAATATCGCTGCAACACCAAACGACGGC 6808 || || || || || | ||| || | ||| | ||||| ||||| || ||| | ||| Sbjct 291405 TTATGAAATCCTTGGAAGAAAAGGATGAATCAAAATATAGCTGCTACGCCAGAACTCGGT 291346 Query 6809 GCAAAGAACCAACTGGACTGTCCGAGAGGATACATGAGAAAGACAGACACAAAGACAGCA 6868 ||||||||||||| || ||||| || ||||| || || || || || ||||| ||||| Sbjct 291345 GCAAAGAACCAACCAGATTGTCCCAGTGGATAAATAAGGAATACGGAAACAAAAACAGCG 291286 Query 6869 ATGGGACCAGAAAACGCGATTGCATTGTAGGGACGAATACCGACTAGACGT-GCGATCTC 6927 || |||||| | || | |||||||| || || || | | || |||| | || | || Sbjct 291285 ATTGGACCAAAGAATGAAATTGCATTATAAGGCCGCA-ATTGAACAGACCTAGCAAGTTC 291227 Query 6928 AAACTGCCGAAGCATGAAACCTATAAGGGCAAAGGCTCCGTGGAGCGCCACAAAAGGCCA 6987 ||| || || | |||||||||||| || ||||| || || ||||| || ||||||| ||| Sbjct 291226 AAATTGACGTAACATGAAACCTATTAGTGCAAAAGCCCCATGGAGAGCGACAAAAGTCCA 291167 Query 6988 TAGTCCCCCAAGTTGGAGCCAGCG 7011 || ||||| | |||| ||| || Sbjct 291166 CAGACCCCCTAATTGGCACCAACG 291143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622119939650000