Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oropetium_20thomaeum_20[genbank_20GCA_5F001182835.1_202015-07-20] 625 sequences; 243,174,629 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq23 129 7e-25 seq58 113 6e-20 seq49 98.7 1e-15 >seq23 Length=2780208 Score = 129 bits (142), Expect = 7e-25 Identities = 302/452 (67%), Gaps = 8/452 (2%) Strand=Plus/Plus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 ||| || ||||| |||||||||||||| || ||||| || | ||| ||| |||||| Sbjct 1221666 GTACTCGCCGACGCGCTTCTCGAAGAAATTGGTCTTGCCCTGCAGGGAGATGAGCTCCAT 1221725 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAAT--TGTTGGCACCCCAATCTGTTTGAGGAGA 127348 | || || ||||| ||| | || | ||| ||| | | |||| || Sbjct 1221726 CCAGTCGAACGGGTTGACGACGTTGTATATCTTCTTGTGTCCC--AGCGCCATGAGCAGG 1221783 Query 127349 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTA 127408 || || | |||| |||| ||||||| ||| | | |||||| |||| ||| Sbjct 1221784 CGGTCGGCGACGAACTCGATGTACTGGCTCATGAGCACGCCGTTCATGCCGACGAGCGCG 1221843 Query 127409 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCG 127468 || ||||||||||| ||| |||| | ||| ||||| || || || ||||| || Sbjct 1221844 CAGGGGAGCGCGTCGCAGACGAACTCGCGCTCGATGTCGACGGCGTCGGCGACGATCTCG 1221903 Query 127469 TGAATAGTGTCCACCCCAGGTCTATTGCGTA--AAGTCTTGAAGAGTTCCACAGCAAACT 127526 | | | || | | | | ||| | | ||| | ||||| || || | Sbjct 1221904 CGGACGCGGGCCTCGTCGAGCTTGGAGCGGAGGAGGTCGT--AGAGTAGGCAGGCGAAGT 1221961 Query 127527 CTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGA 127586 | ||| || |||||||| || |||||||| || || |||||| || || ||||||| Sbjct 1221962 CGCAGTGCAGGCCCTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGTGAGTCCCGGCATGA 1222021 Query 127587 GACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCA 127646 | || |||||||| | |||||| || || || || ||||| ||||||||||| ||||| | Sbjct 1222022 GGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTCGA 1222081 Query 127647 CACACGCGAACGCAAATAGACGCTCGGCAAAG 127678 | || |||||||| | || ||||| || ||| Sbjct 1222082 CGCAGGCGAACGCGACGAGGCGCTCCGCGAAG 1222113 >seq58 Length=1564795 Score = 113 bits (124), Expect = 6e-20 Identities = 279/419 (67%), Gaps = 6/419 (1%) Strand=Plus/Plus Query 12690 ACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATG 12749 ||||||| || |||||||| | ||||| || || || || ||| |||| ||| Sbjct 1272569 ACGGTGACCTGCCGATCAAACCTCCCTGGCCGTAGAAGAGCCGAGTCCAGGACATCGGGC 1272628 Query 12750 CGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTC 12809 | ||| || || |||| || | || ||| | | | ||||||| |||||||| ||| Sbjct 1272629 CTGTTGGTGGCAGCGAGCACGATGACGCCACTGTTGCCTGCGAAGCCGTCCATCTCCGTC 1272688 Query 12810 AAGAGTTGATTGATGGTTTGTTCACGTTCATCATT--CGCGGGCATACCACCCGCACTGC 12867 | || || || ||||| || || | || || || | | || || | |||| | Sbjct 1272689 AGCAGCTGGTTAATGGTCTGCTCCCTCTCGTCGTTTCCACCACCAAGCC--CAGCACCAC 1272746 Query 12868 GTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGG 12927 | || | |||||||| ||||| || |||||||| || || || || || | || Sbjct 1272747 GCTGTCTGCCGACGGCATCAATCTCATCAATGAAGACAATGCAAGGCGCCTTGGCCTTGG 1272806 Query 12928 CAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAAT 12987 | || |||| || | || || |||||||||||| || || | ||| || || | Sbjct 1272807 CCTTCTCGAAGAGGTCCCTGACCCTGGAGGCACCGACACCGACGAAGAGCTCGACGAACT 1272866 Query 12988 TGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGA 13047 || |||| || || ||| || ||| || || || |||| ||| || ||||||| Sbjct 1272867 CGGACGCGGCGCAGGAGAAGAACGGCACGCCGGCCTCCCCGGCGACGGCACGCGCGAGGA 1272926 Query 13048 GGGTCTTCCCCGTCCCTGGTTTCCCCGCGAGAAGGGCACCAC-GTGGGATCCTGGCACC 13105 | ||||| |||||||| || || |||| | |||||| | ||||||| |||| || Sbjct 1272927 GAGTCTTACCCGTCCCAGGCGGACCGACGAGCA-GGCACCCCTTTGGGATCTTGGCTCC 1272984 >seq49 Length=1823295 Score = 98.7 bits (108), Expect = 1e-15 Identities = 223/330 (68%), Gaps = 8/330 (2%) Strand=Plus/Minus Query 12741 ATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCGAAGCCATCC 12800 |||||| | ||| || || || || |||| ||| || || | || || |||||| Sbjct 586619 ATATCAGCTCTGTTAGTGGCAGCAATAACAATGATTCCAGTGTTCCCCTCAAAACCATCC 586560 Query 12801 ATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATT--CGCGGGC-ATACCA 12857 |||||||||| |||||||| | ||| || || | ||||||||| | | | || | Sbjct 586559 ATCTCAGTCAGAAGTTGATTCAGGGTCTGCTCCCTTTCATCATTTCCACCACCGAT---A 586503 Query 12858 CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGA 12917 |||| | | |||| | || || || || ||||| |||| || || || || ||| | Sbjct 586502 CCCGTTCCTCTTTGCCTTCCAACAGCATCGATTTCATCAACAAACACTATGCAAGGTGCA 586443 Query 12918 TTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATC 12977 || || ||| || ||| | ||| || || | ||||||||||| ||||||||| Sbjct 586442 TTCTCCTTGGCCTTTTTAAAAAGATCACGAACCCGGGAAGCACCGACACCAACAAACATC 586383 Query 12978 TCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGC 13036 |||||||| | | | | | |||| || ||| || || | ||| || || || || Sbjct 586382 TCCACAAACTCAGATCCCG-ATATTGAGAAGAAAGGCACTCCAGCTTCTCCTGCAATTGC 586324 Query 13037 TCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 13066 |||||| | ||||| |||||||| || Sbjct 586323 CTTGGCGAGCAAAGTCTTACCCGTCCCGGG 586294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613502406975000