Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oropetium_20thomaeum_20[genbank_20GCA_5F001182835.1_202015-07-20] 625 sequences; 243,174,629 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq403 111 6e-19 seq72 111 6e-19 seq8 111 6e-19 seq57 105 3e-17 >seq403 Length=29911 Score = 111 bits (122), Expect = 6e-19 Identities = 145/200 (73%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 451265 GTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCA 451324 ||| | || || ||||| || ||||| ||| |||| |||| | || | | ||| Sbjct 23910 GTTTTGACCAAGATGAAGGAGACAGCGGAAGCATATCTTGGCAAATCTGTCTCAAAGGCA 23851 Query 451325 GTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGA 451384 || |||||||||| || |||||||||||||| || || ||||| || || ||||| || Sbjct 23850 GTGGTTACTGTTCCAGCATATTTCAATGATGCTCAGCGTCAAGCCACAAAGGATGCGGGT 23791 Query 451385 CATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCA 451444 | |||||||| | | ||| | ||||| |||||||| |||||||||||||| | Sbjct 23790 CGGATTGCTGGCCTTGAGGTTGAAAGGATTATCAATGAACCGACAGCAGCTGCTCTGTCT 23731 Query 451445 TATGGACTAGGAAAATCAAA 451464 ||||| || ||| | |||| Sbjct 23730 TATGG--TATGAACAACAAA 23713 >seq72 Length=1231634 Score = 111 bits (122), Expect = 6e-19 Identities = 102/129 (79%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 451322 GCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCA 451381 || || ||||||||||| ||||||||||||||||| || || ||||| || || |||||| Sbjct 277053 GCTGTGATTACTGTTCCAGCTTATTTCAATGATGCCCAGCGTCAAGCCACAAAGGATGCA 276994 Query 451382 GGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTA 451441 || | |||||||| | ||||| | || || |||||||| |||||||||||||| Sbjct 276993 GGCCGCATTGCTGGCCTCGATGTTGAAAGGATCATCAATGAACCAACAGCAGCTGCTCTG 276934 Query 451442 GCATATGGA 451450 | |||||| Sbjct 276933 TCTTATGGA 276925 >seq8 Length=4429347 Score = 111 bits (122), Expect = 6e-19 Identities = 145/200 (73%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 451265 GTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCA 451324 ||| | || || ||||| || ||||| ||| |||| |||| | || | | ||| Sbjct 1911507 GTTTTGACCAAGATGAAGGAGACAGCGGAAGCATATCTTGGCAAATCTGTCTCAAAGGCA 1911448 Query 451325 GTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGA 451384 || |||||||||| || |||||||||||||| || || ||||| || || ||||| || Sbjct 1911447 GTGGTTACTGTTCCAGCATATTTCAATGATGCTCAGCGTCAAGCCACAAAGGATGCGGGT 1911388 Query 451385 CATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCA 451444 | |||||||| | | ||| | ||||| |||||||| |||||||||||||| | Sbjct 1911387 CGGATTGCTGGCCTTGAGGTTGAAAGGATTATCAATGAACCGACAGCAGCTGCTCTGTCT 1911328 Query 451445 TATGGACTAGGAAAATCAAA 451464 ||||| || ||| | |||| Sbjct 1911327 TATGG--TATGAACAACAAA 1911310 Score = 111 bits (122), Expect = 6e-19 Identities = 145/200 (73%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 451265 GTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCA 451324 ||| | || || ||||| || ||||| ||| |||| |||| | || | | ||| Sbjct 1948212 GTTTTGACCAAGATGAAGGAGACAGCGGAAGCATATCTTGGCAAATCTGTCTCAAAGGCA 1948153 Query 451325 GTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGA 451384 || |||||||||| || |||||||||||||| || || ||||| || || ||||| || Sbjct 1948152 GTGGTTACTGTTCCAGCATATTTCAATGATGCTCAGCGTCAAGCCACAAAGGATGCGGGT 1948093 Query 451385 CATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCA 451444 | |||||||| | | ||| | ||||| |||||||| |||||||||||||| | Sbjct 1948092 CGGATTGCTGGCCTTGAGGTTGAAAGGATTATCAATGAACCGACAGCAGCTGCTCTGTCT 1948033 Query 451445 TATGGACTAGGAAAATCAAA 451464 ||||| || ||| | |||| Sbjct 1948032 TATGG--TATGAACAACAAA 1948015 >seq57 Length=1649376 Score = 105 bits (116), Expect = 3e-17 Identities = 152/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || || || || ||||| || || || |||||||| ||||| ||| Sbjct 1450106 ATGCAGATCTTTGTGAAGACGCTCACTGGAAAGACCATAACTCTTGAGGTTGAGAGCTCT 1450165 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | | || ||| || ||||| |||||||| || || ||||| || Sbjct 1450166 GACACCATTGATAATGTGAAGGCAAAGATCCAAGACAAGGAAGGCATCCCACCTGACCAG 1450225 Query 391170 CA-ACGTTTA-ATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATA 391227 || | | ||| |||| || || || || || || |||||| | || ||||| ||||| | Sbjct 1450226 CAGAGGCTTATATTTGCT--GGAAAGCAGCTGGAGGATGGACGCACATTGGCTGATTACA 1450283 Query 391228 ATATTGATAAGGATGCAACACTTCACTTAGT 391258 |||| | ||||| | ||||||||||| || Sbjct 1450284 ATATCCAGAAGGAATCCACACTTCACTTGGT 1450314 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975702578817500