Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oropetium_20thomaeum_20[genbank_20GCA_5F001182835.1_202015-07-20] 625 sequences; 243,174,629 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq100 165 6e-35 seq77 105 5e-17 seq13 104 2e-16 seq72 91.5 1e-12 >seq100 Length=558633 Score = 165 bits (182), Expect = 6e-35 Identities = 692/1067 (65%), Gaps = 39/1067 (4%) Strand=Plus/Plus Query 517259 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 517318 |||| || || ||||||||||||||||| | ||||| ||| || |||||||| Sbjct 343944 GCAGAGACGTTCAGAATACCATTGGCATCAATGTCAAAACAGACAGTCATCTGAGGGACA 344003 Query 517319 CCTCTCTGAGCAGGTGGGATCCCTTCCAAAT---TAAATGTTCCCA-GATTATTATTATC 517374 || || ||||||| ||||| |||| || | || |||||| | ||| || || Sbjct 344004 CCCCTAGGAGCAGGGGGGAT----TCCAGATAGCTCAAACTTCCCAAGGAGATTGTTGTC 344059 Query 517375 TTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGA 517434 | | | | ||||| || ||| ||||| ||| ||| ||| || || || Sbjct 344060 CCTCATCCGGGTCCTCTCACCTTCATAAACCTGGATCAACACTCCAGGTTGGTTGTCAGA 344119 Query 517435 ATAAGTTGTAAATACTCTGGAT--TTTTTACAAGGAATTGTTGTGTTTCTATCAATAATA 517492 || || | || || ||| || || || ||||| || ||||| || ||||| Sbjct 344120 GTAGGTGGAGAAGAC-CTG-ATCCTTCTTGGTTGGAATAGTGGTGTTCCTCGGAATAAGC 344177 Query 517493 TTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGG 517552 |||||| | || ||||| || || | |||||| | || || || ||||||| ||| Sbjct 344178 ACGGTCATGACTCCTCCTGCAGTCTCAAGACCAAGCAACAGTGGGGTAACATCAAGGAGG 344237 Query 517553 ACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCA 517612 | || | || | || |||| | | ||| ||| ||||| || || | ||||||| Sbjct 344238 AGAAGGTCCTGCACCTTCTCATTACCCTCTCCACTAAGGATAGCAGCCTGGACAGCAGCA 344297 Query 517613 CCATATGCAACAGCTTCATCAGGATTAA--CAGTTTCATTTAGTTTTTTACCATTGAAAA 517670 || || |||||| ||||||||||||||| | || || || | || ||||||| || Sbjct 344298 CCGTAGGCAACATCTTCATCAGGATTAATGCTCTTGCAG--AGCTCCTTTCCATTGACAA 344355 Query 517671 AATTTGAAAGAAGTTGTCTTACCT-TAGGAATACGAGATGATCCTCCAACTAATACAATT 517729 | | || || || || | || | ||||| | || ||| || ||||| | |||| Sbjct 344356 AGTCCTGCAGCAGCTG-CTGAACTCTGGGAATTCTAGTTGAACCACCAACAAGGACAACA 344414 Query 517730 TCATGCACCTGTGATT-TATCCAGTTTTGAATCCAATAAAACTTTT-TCAACGGGTTCAA 517787 ||||| || || || |||||| | | ||| ||| | ||| || || || || | Sbjct 344415 TCATGGACAC-TGCTTATATCCATCTGGGCATCTC-TAAGGCATTTCTCCACTGGCTCCA 344472 Query 517788 GACCCGCTCTAAACAAGTC--TGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGAC 517845 | | ||||| | ||| || || | || || || | ||||| |||| ||| Sbjct 344473 TGCACTTCCTAAAGAGGTCCATGTTCA--GCTCCTCAAACCTGGCTCTGGTAATGGTGGT 344530 Query 517846 ATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGA 517905 || |||||||||| || || | || || | |||||| || || || | | ||||| Sbjct 344531 ATAGAAATCAATTCCCTCAAAAAGGGAGTCGATTTCAATGGTTGTCTGTGCAGTGGAAGA 344590 Query 517906 TAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG 517965 ||| | | ||||| | |||||||||||||| || || | |||| | |||| Sbjct 344591 TAGGGTCCTCTTAGCTCTCTCACATGCTGTCCTAAGCCTCC-TAAGAGAACGGG-GATTC 344648 Query 517966 --ATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGA 518023 | | | ||| | || | ||| | ||| | ||| | | | | || || || Sbjct 344649 CCACTGATATCCTTCTTGTGTTTCCGCTTAATATCCTGGGAAAGTGGT-TCACCAGGCGG 344707 Query 518024 TTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGT 518083 || || || || || || || | | ||| | || | || || | || | || | Sbjct 344708 TTGTCGAAGTCCTCCCCACCAAGGTGAGTGTCACCGGCTGTGGCCTTCACCTCAAAGATA 344767 Query 518084 CCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGT 518143 || ||||||| | | |||| |||||| || ||| |||| | || |||||||| Sbjct 344768 CCCTCTTCAATGGTAAGCAGAGAGACATCAAAAGTGCCATCACCAAGGTCGAAAATAAGC 344827 Query 518144 ACATTCATTTCTTTGTCT----TGG--TTTTTATCAAGACCATACGCAAAAGCAGCAGCA 518197 |||||| | || | | | || || |||||||| || |||| ||||||||| Sbjct 344828 ACATTCTTCTCACCAACACTAGTAGCCTTCTTGTCAAGACCGTAGGCAATTGCAGCAGCA 344887 Query 518198 GTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTG 518257 || || ||||| || |||| || ||||||||||||||||| || ||||| || || Sbjct 344888 GTAGGCTCATTGATGATTCGCATGACATTAAGACCAGCAATAACGCCAGCATCCTTTGTC 344947 Query 518258 GCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGC 518304 || || | | |||||| || || || ||||| ||||| | ||| || Sbjct 344948 GCCTGCC--TCTGAATCATTGAAGTAAGCAGGTACAGTCACAACAGC 344992 >seq77 Length=972522 Score = 105 bits (116), Expect = 5e-17 Identities = 147/205 (72%), Gaps = 6/205 (3%) Strand=Plus/Plus Query 518108 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCT-TGG-- 518164 |||||| ||| || || || | ||||| || || |||||| | || | | ||| Sbjct 234971 ACATCAAAGGTACCGCCTCCAAGGTCAAAGATGAGCACATTCTTCTCACCGACACTGGAA 235030 Query 518165 ---TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAA 518221 || || ||||||||||| |||| ||| ||||| || || ||||| || || | | Sbjct 235031 GCCTTCTTGTCAAGACCATATGCAATAGCTGCAGCGGTAGGCTCATTGATGATACGGAGC 235090 Query 518222 ACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAA 518281 ||||| ||||||||||| ||| ||||| || ||||| || || || || ||||| || Sbjct 235091 ACATTGAGACCAGCAATCACTCCAGCATCCTTGGTGGCCTGCCTCTGAGAGTCGTTGAAG 235150 Query 518282 TATGCAGGAACAGTAATAACGGCAT 518306 || |||||||| || | ||| |||| Sbjct 235151 TAGGCAGGAACTGTGACAACAGCAT 235175 >seq13 Length=3725751 Score = 104 bits (114), Expect = 2e-16 Identities = 151/212 (71%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 518104 AGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTG 518163 || ||||||| ||| || || |||| |||||| | || | | |||| || | || Sbjct 666713 AGATACATCAAAGGTACCGCCTCCCAAATCAAACACTAGAA---TTGTTTCATTATTTT- 666768 Query 518164 GTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAAC 518223 | || |||| ||||||||||| | ||||||||||| ||||| ||||| | | ||| Sbjct 666769 --TCTTCTCAAAACCATACGCAAGCGATGCAGCAGTTGGCTCATTTATAATACGAAGAAC 666826 Query 518224 ATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATA 518283 | || || ||||| | || |||||| |||| ||| |||||||||||| || || || Sbjct 666827 TTCCAGGCCCGCAATACGACCAGCATCTCTAGTTGCTGTTCTTTGTGAATCATTGAAGTA 666886 Query 518284 TGCAGGAACAGTAATAACGGCATCAGTTACTT 518315 || ||||| |||| || || | |||| || Sbjct 666887 CGCTGGAACTGTAACCACTGCTTTTGTTATTT 666918 >seq72 Length=1231634 Score = 91.5 bits (100), Expect = 1e-12 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 518177 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 518236 ||||| | | |||||| || ||||||||||| || || || ||||| || |||||| Sbjct 276926 CCATAAGACAGAGCAGCTGCTGTTGGTTCATTGATGATCCTTTCAACATCGAGGCCAGCA 276985 Query 518237 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 518296 || | |||||||| || |||||||| | || | ||| || ||||| || ||||||||| Sbjct 276986 ATGCGGCCTGCATCCTTTGTGGCTTGACGCTGGGCATCATTGAAATAAGCTGGAACAGTA 277045 Query 518297 ATAACGGC 518304 || || || Sbjct 277046 ATCACAGC 277053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780791385441250