Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oropetium_20thomaeum_20[genbank_20GCA_5F001182835.1_202015-07-20] 625 sequences; 243,174,629 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq58 113 5e-20 seq23 102 1e-16 seq46 82.4 9e-11 >seq58 Length=1564795 Score = 113 bits (124), Expect = 5e-20 Identities = 256/383 (67%), Gaps = 8/383 (2%) Strand=Plus/Plus Query 11591 CGAAACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGG 11650 |||| |||||||| || || || |||||||| || ||||| || | ||| ||||| Sbjct 1272669 CGAAGCCGTCCATCTCCGTCAGCAGCTGGTTAATGGTCTGCTCCCTCTCGTCGTTTC--- 1272725 Query 11651 GCAT-ACCA---CCTGCCGAACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACG 11706 || |||| || || ||||| | ||||| || ||||||||||| ||||| || Sbjct 1272726 -CACCACCAAGCCCAGCACCACGCTGTCTGCCGACGGCATCAATCTCATCAATGAAGACA 1272784 Query 11707 ATACACGGTTGGTTGGCACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACA 11766 || || || ||||| |||| ||||| || || | || | || || ||| Sbjct 1272785 ATGCAAGGCGCCTTGGCCTTGGCCTTCTCGAAGAGGTCCCTGACCCTGGAGGCACCGACA 1272844 Query 11767 CCTACGAACATCTCAACGAAGTTTGCGGCAGAACACTGAATGAAGGGAACATTAGACTCA 11826 || ||||| | ||| ||||| | | || | || | ||| || || | ||| Sbjct 1272845 CCGACGAAGAGCTCGACGAACTCGGACGCGGCGCAGGAGAAGAACGGCACGCCGGCCTCC 1272904 Query 11827 CCAGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCG 11886 || |||| ||| || |||||||||||||||||||| ||||| | ||| |||| ||| Sbjct 1272905 CCGGCGACGGCACGCGCGAGGAGAGTCTTACCCGTCCCAGGCGGACCGACGAGCAGGCAC 1272964 Query 11887 CCACGGGGGATCTTGGCACCACTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACA 11946 || ||||||||||| || | ||| || || ||||||||||| || || Sbjct 1272965 CCCTTTGGGATCTTGGCTCCGAGCGCGGTGTACTTGTCCGGATTCTTGAGGAAATCAACG 1273024 Query 11947 ATCTCCTCAAGTTCCTCCTTGGC 11969 | ||||| || || |||||| Sbjct 1273025 ACCTCCTGCAGCTCGAGCTTGGC 1273047 >seq23 Length=2780208 Score = 102 bits (112), Expect = 1e-16 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || || || || || || ||||||||||| || |||| ||||| |||||||| || Sbjct 1221967 TGCAGGCCCTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGTGAGTCCCGGCATGAGGCCG 1222026 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | ||||| ||||| |||||||| || || || || |||||||||||||| || ||| Sbjct 1222027 CGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTCGACGCAG 1222086 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAA 119653 ||||| |||| || ||||| || || Sbjct 1222087 GCGAACGCGACGAGGCGCTCCGCGAA 1222112 >seq46 Length=1857289 Score = 82.4 bits (90), Expect = 9e-11 Identities = 80/103 (78%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 109744 CGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGT 109803 ||||| ||| ||||||| ||||||||||| || || |||||||| || || || || Sbjct 1673603 CGTCGACTGTAAATGTTAGATGTGTAGGGTTCAAAGCATTCATTGTTACCAAGAATCTGA 1673544 Query 109804 GCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTC 109846 ||||||||| |||||||| ||||| | |||||| ||||| Sbjct 1673543 CTAGTGGAAGCAGTGGGCATTGGAGCAACAAGAAGAGAGTTTC 1673501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588971398625000