Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oropetium_20thomaeum_20[genbank_20GCA_5F001182835.1_202015-07-20] 625 sequences; 243,174,629 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq49 136 5e-27 seq58 118 1e-21 seq23 109 6e-19 >seq49 Length=1823295 Score = 136 bits (150), Expect = 5e-27 Identities = 252/366 (69%), Gaps = 8/366 (2%) Strand=Plus/Minus Query 9195 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9254 |||||||| || || | ||| | || ||| | |||||| | | || || || || Sbjct 586655 TCAAAGCGTCCAGGTCTAAGTAAAGCAGAATCCAAAATATCAGCTCTGTTAGTGGCAGCA 586596 Query 9255 ATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATA 9314 || |||| || || || | ||||||||||||||||| |||| |||||| || | Sbjct 586595 ATAACAATGATTCCAGTGTTCCCCTCAAAACCATCCATCTCAGTCAGAAGTTGATTCAGG 586536 Query 9315 GTTTGTTCCCGTTCATCATTCGCTGGCATACC---ACCAGCACTGCGTTGCTTTCCCACG 9371 || || |||| ||||||||| | ||| ||| | | | |||| |||| || Sbjct 586535 GTCTGCTCCCTTTCATCATTTCCACC---ACCGATACCCGTTCCTCTTTGCCTTCCAACA 586479 Query 9372 GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGA 9431 ||||| || ||||||| || || || || ||| ||| || ||| ||| ||| ||| Sbjct 586478 GCATCGATTTCATCAACAAACACTATGCAAGGTGCATTCTCCTTGGCCTTTTTAAAAAGA 586419 Query 9432 TCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACAT 9491 || ||||||| || || ||||||||||||||||||||||| | | | | | || Sbjct 586418 TCACGAACCCGGGAAGCACCGACACCAACAAACATCTCCACAAACTCAGATCCCG-ATAT 586360 Query 9492 TG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGT 9550 || || ||| || || || ||| || ||||| || |||||| | |||||||||||| Sbjct 586359 TGAGAAGAAAGGCACTCCAGCTTCTCCTGCAATTGCCTTGGCGAGCAAAGTCTTACCCGT 586300 Query 9551 ACCTGG 9556 || || Sbjct 586299 CCCGGG 586294 >seq58 Length=1564795 Score = 118 bits (130), Expect = 1e-21 Identities = 219/317 (69%), Gaps = 6/317 (2%) Strand=Plus/Plus Query 9282 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATT--CGCTG 9339 || || |||||||| |||| || |||||||| || || |||| || || || | | Sbjct 1272671 AAGCCGTCCATCTCCGTCAGCAGCTGGTTAATGGTCTGCTCCCTCTCGTCGTTTCCACCA 1272730 Query 9340 GCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATAC 9399 || || |||||| || || | || ||||||||||||||||||||||||||||| | Sbjct 1272731 CCAAGCC--CAGCACCACGCTGTCTGCCGACGGCATCAATCTCATCAATGAAGACAATGC 1272788 Query 9400 ATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAA 9459 | || || | ||| | || ||||| || | ||||| ||| || ||||| | Sbjct 1272789 AAGGCGCCTTGGCCTTGGCCTTCTCGAAGAGGTCCCTGACCCTGGAGGCACCGACACCGA 1272848 Query 9460 CAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCG 9519 | || | ||| || || | | |||| || || ||| || || | || || | Sbjct 1272849 CGAAGAGCTCGACGAACTCGGACGCGGCGCAGGAGAAGAACGGCACGCCGGCCTCCCCGG 1272908 Query 9520 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCC 9579 | | ||| || ||||| |||||||||||||| || ||| ||| |||| | |||||||| Sbjct 1272909 CGACGGCACGCGCGAGGAGAGTCTTACCCGTCCCAGGCGGACCGACGAGCA-GGCACCCC 1272967 Query 9580 -GTGGAATCTTGGCGCC 9595 ||| |||||||| || Sbjct 1272968 TTTGGGATCTTGGCTCC 1272984 >seq23 Length=2780208 Score = 109 bits (120), Expect = 6e-19 Identities = 113/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 ||| || ||||| || || || || || || || |||||| || || |||||||| || Sbjct 1221966 GTGCAGGCCCTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGTGAGTCCCGGCATGAGGCC 1222025 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 |||||||| | ||| | || |||||||| || || ||||||||||| ||||| || || Sbjct 1222026 GCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTCGACGCA 1222085 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAG 117432 || ||||| | |||||||| |||||| Sbjct 1222086 GGCGAACGCGACGAGGCGCTCCGCGAAG 1222113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589976190775000