Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oropetium_20thomaeum_20[genbank_20GCA_5F001182835.1_202015-07-20] 625 sequences; 243,174,629 total letters Query= NC_015279.1 Length=190789 Score E Sequences producing significant alignments: (Bits) Value seq15 587 9e-163 seq72 167 3e-36 seq113 89.7 6e-13 >seq15 Length=3529114 Score = 587 bits (650), Expect = 9e-163 Identities = 740/1014 (73%), Gaps = 2/1014 (0%) Strand=Plus/Minus Query 181424 TTTGACATCCTTGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGA 181483 ||||| || | || |||||| | | | ||||| || || ||||| || ||||| || Sbjct 3061865 TTTGATATTATGGACGACTGGTTACGAAGGGACCGTTTCGTTTTTGTAGGATGGTCCGGC 3061806 Query 181484 CTACTTCTTTTTCCCACTGCTTATCTTGCAATTGGGGGCTGGCTCACTGGCACTACTTTT 181543 ||| | || ||||| ||||||| | || | ||||| ||| | || || ||||||||| Sbjct 3061805 CTATTGCTCTTTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACTACTTTT 3061746 Query 181544 GTTACGTCGTGGTACACCCACGGATTGGCGTCTTCCTACCTTGAGGGTGCTAATTTCCTT 181603 || || || ||||| ||||| |||||||| |||||| | || ||| |||||| | Sbjct 3061745 GTAACTTCTTGGTATACCCATGGATTGGCTAGTTCCTATTTGGAAGGTTGCAATTTCTTA 3061686 Query 181604 ACAGCGGCTGTGTCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGT 181663 || ||||| || || || |||||| | | | | || ||| | | ||||| ||||| Sbjct 3061685 ACGGCGGCAGTTTCCACCCCTGCTAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGA 3061626 Query 181664 CCTGAAGCTCAGGGCGATTTCGTCCGCTGGGTCCAACTTGGGGGACTCTGGGCTTTTGTG 181723 || ||||| || || ||||| || ||| |||| | ||||| || ||| ||||||| Sbjct 3061625 CCGGAAGCACAAGGGGATTTTACTCGTTGGTGCCAATTAGGGGGTCTGTGGACTTTTGTC 3061566 Query 181724 GCGCTCCACGGAGCCTTCGCTCTTATCGGTTTTATGCTCAGGCAATTTGAACTTGCTCG- 181782 || ||||| || || || || || || ||||| ||| | | ||||||||||||||| | Sbjct 3061565 GCTCTCCATGGGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTAGG 3061506 Query 181783 TCTAATCGGAATCCGACCCTACAATGCGATTGCTTTTTCCGGTCCTATTGCTGTATTCGT 181842 ||| || | | || || || ||||| ||| | || || ||||| || ||||| || || Sbjct 3061505 TCTGTTCA-ATTGCGGCCTTATAATGCAATTTCATTCTCTGGTCCAATCGCTGTTTTTGT 3061447 Query 181843 CTCTGTATTTCTCATCTATCCTCTGGGACAATCCAGTTGGTTCTTTGCGCCGAGTTTCGG 181902 || ||||| || || ||||| ||||||||||| ||||||||||||| |||||||| || Sbjct 3061446 TTCCGTATTCCTTATTTATCCACTGGGACAATCTGGTTGGTTCTTTGCACCGAGTTTTGG 3061387 Query 181903 TGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAA 181962 || || || || || || ||| | || ||| |||| || ||||||||||||||| | || Sbjct 3061386 CGTAGCAGCTATATTTCGATTCATCCTTTTCTTCCAAGGATTTCATAATTGGACGTTGAA 3061327 Query 181963 TCCCTTCCATATGATGGGTGTTGCTGGTATCCTGGGTGGCGCATTACTCTCTGCAATTCA 182022 ||||| ||||||||||| ||||| || | | |||| || | || | || ||||| Sbjct 3061326 CCCCTTTCATATGATGGGAGTTGCCGGAGTATTAGGTGCAGCTCTCCTATGCGCTATTCA 3061267 Query 182023 CGGTGTGACCGTGGAGAATACTCTGTATCAAGACGGTGACCAAGCAAATACTTTCAAAGC 182082 || | || || || || ||||| | |||| ||||| |||||||| ||| ||| Sbjct 3061266 TGGGGCTACTGTAGAAAACACTCTATTCGAAGATGGTGATGGTGCAAATACCTTCCGAGC 3061207 Query 182083 ATTCGATTCAACTCAAGAAGAAGAAACCTATTCAATGGTTACAGCGAACCGCTTCTGGTC 182142 || | | ||||||| |||||||| ||||||||||| || || |||||||| ||||| Sbjct 3061206 TTTTAACCCCACTCAAGCGGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTC 3061147 Query 182143 TCAGATCTTCGGTATTGCGTTTAGCAATAAGAGGTGGTTGCATTTCTTTATGCTCTTTGT 182202 || ||||| ||| |||| ||| |||||| | ||||| |||||||||||||| ||||| Sbjct 3061146 CCAAATCTTTGGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTTGT 3061087 Query 182203 TCCTGTTATGGGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCG 182262 || || | ||| | |||| ||| | || || | |||| || ||||| ||||| || Sbjct 3061086 ACCCGTCACCGGTTTATGGATGAGTGCTATTGGCGTAGTTGGCCTGGCTCTGAACCTACG 3061027 Query 182263 TGCTTATGACTTTGTATCCCAAGAAATCAGAGCATCAGAAGACCCAGAGTTCGAGACGTT 182322 ||| |||||||| || ||||| |||||| | ||| | ||||| || || || ||||| || Sbjct 3061026 TGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTT 3060967 Query 182323 CTACACAAAGAACATTCTCTTGAATGAAGGTCTGCGTGCATGGTTAGCACCAGTCGATCA 182382 |||||| || || ||||| || || || ||| | ||||| ||| | ||| | ||||| Sbjct 3060966 CTACACCAAAAATATTCTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGATCA 3060907 Query 182383 ACCACATGAGAACTTTGTGTTCCCTGAGGAAGTATTACCCAGAGGTAACGCACT 182436 || ||||| || || | ||||||||||| || |||| | || ||||| || Sbjct 3060906 GCCTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 3060853 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 141254 TTCCTCAGTAGCTCAGCGGCAGAGCCGACGACTGTTAATCGTCTGGTCGTAGGTTCAAAT 141313 |||||||||||||||| || ||||| | || ||||||| || |||||||||||||| ||| Sbjct 3081376 TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACCGACTGGTCGTAGGTTCGAAT 3081317 Query 141314 CCTACCTGGGGAG 141326 ||||| ||||||| Sbjct 3081316 CCTACTTGGGGAG 3081304 >seq72 Length=1231634 Score = 167 bits (184), Expect = 3e-36 Identities = 198/266 (74%), Gaps = 2/266 (1%) Strand=Plus/Plus Query 181688 CGCTGGGTCCAACTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGGAGCCTTCGCTCTT 181747 || ||| |||| | ||||| || ||| ||||||| || ||||| || || || || || Sbjct 291143 CGTTGGTGCCAATTAGGGGGTCTGTGGACTTTTGTCGCTCTCCATGGGGCTTTTGCACTA 291202 Query 181748 ATCGGTTTTATGCTCAGGCAATTTGAACTTGCTCG-TCTAATCGGAATCCGACCCTACAA 181806 || ||||| ||| | | ||||||||||||||| | ||| || | | || || || || Sbjct 291203 ATAGGTTTCATGTTACGTCAATTTGAACTTGCTAGGTCTGTTCA-ATTGCGGCCTTATAA 291261 Query 181807 TGCGATTGCTTTTTCCGGTCCTATTGCTGTATTCGTCTCTGTATTTCTCATCTATCCTCT 181866 ||| ||| | || | ||||| || ||||| || || || ||||| || || ||||| || Sbjct 291262 TGCAATTTCATTCTTTGGTCCAATCGCTGTTTTTGTTTCCGTATTCCTTATTTATCCACT 291321 Query 181867 GGGACAATCCAGTTGGTTCTTTGCGCCGAGTTTCGGTGTCGCGGCGATTTTCCGCTTCCT 181926 ||||||||| ||||||||||||| ||||||| || || || || || || | ||| | Sbjct 291322 GGGACAATCTGGTTGGTTCTTTGCACCGAGTTCTGGCGTAGCAGCTATATTTTGATTCAT 291381 Query 181927 TCTCTTCCTCCAGGGCTTTCATAATT 181952 || ||| |||| || |||||||||| Sbjct 291382 CCTTTTCTTCCAAGGATTTCATAATT 291407 >seq113 Length=353742 Score = 89.7 bits (98), Expect = 6e-13 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 171942 CCATATTCCTGCCGTGCCGGTGCCTGTTCCAGCTGTGCTGGTAAACTTGAGAGTGGTACG 172001 ||||| || |||||||| || |||||||||| ||| ||||| ||| ||||| ||| | Sbjct 147071 CCATACTCGTGCCGTGCTGGGGCCTGTTCCACCTGCGCTGGCAAAATTGAGGTTGGCGAG 147130 Query 172002 GTAGATCAGTCAGAGCAATCTTTCCTTGATGATGATCAAATGGACGCAGGATTCGTTCTG 172061 ||||||||||| || ||| ||||||||||| | || || | ||| | || ||| Sbjct 147131 GTAGATCAGTCCGATGGATCCTTCCTTGATGACGGGCAGCAGGCTGAAGGCTATGTGCTG 147190 Query 172062 ACCTGTGTTGCTTATCCTACAAGCGATTGTGT 172093 || ||||| | || |||| ||| ||||| Sbjct 147191 ACATGTGTGTCGTACCCTAAGTCCGACTGTGT 147222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610392031275000