Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oropetium_20thomaeum_20[genbank_20GCA_5F001182835.1_202015-07-20] 625 sequences; 243,174,629 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq15 381 7e-101 seq122 89.7 6e-13 >seq15 Length=3529114 Score = 381 bits (422), Expect = 7e-101 Identities = 717/1048 (68%), Gaps = 41/1048 (4%) Strand=Plus/Minus Query 170529 TTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTTGTATTCATAGGATGGTCTGGT 170588 |||||| || | |||||||||||| || || ||||| || || |||||||||| || Sbjct 3061865 TTTGATATTATGGACGACTGGTTACGAAGGGACCGTTTCGTTTTTGTAGGATGGTCCGGC 3061806 Query 170589 CTTTTACTTCTGCCTTGTGCATACCTATCAATCGGTGGTTGGTTCTTAGGGACTACCTTC 170648 || || || | |||||||| || | | | || |||||||| ||||||||| || Sbjct 3061805 CTATTGCTCTTTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACTACTTTT 3061746 Query 170649 GTTACATCATGGTATACACATGGTGTTGCTTCCTCATATCTTGAGGGATGTAACTTCCTA 170708 || || || |||||||| ||||| | ||| || ||| | || || || || ||| || Sbjct 3061745 GTAACTTCTTGGTATACCCATGGATTGGCTAGTTCCTATTTGGAAGGTTGCAATTTCTTA 3061686 Query 170709 ACAGCAGCAGTTTCCACACCTGGCGACGCAATGGGT---CATAGTCTT--CTGTTCCTTT 170763 || || ||||||||||| |||| ||| | | || | |||| || | || | Sbjct 3061685 ACGGCGGCAGTTTCCACCCCTG-----CTAATAGTTTAGCACACTCTTTGTTGCTACTAT 3061631 Query 170764 GGGGACCTGAAGCACAAGGTTCATTTGTTCGTTGGTTACAACTCGGAGGTTTATGGAACT 170823 ||||||| ||||||||||| ||| |||||||| ||| | || ||| | |||| | Sbjct 3061630 GGGGACCGGAAGCACAAGGGGATTTTACTCGTTGGTGCCAATTAGGGGGTCTGTGGACTT 3061571 Query 170824 TTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCAGACAATTTGAGATCG 170883 |||| || | ||||| | |||| ||| |||||||||||| | | |||||||| | | Sbjct 3061570 TTGTCGCTCTCCATGGGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTG 3061511 Query 170884 C-AGGACTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGTC 170942 | ||| | ||| | | ||||| || ||| | ||||||||| | ||||| || Sbjct 3061510 CTAGGTC-TGTTCAATTGCGGCCTTATAATGCAATTTCATTCTCTGGTCCAATCGCTGTT 3061452 Query 170943 TTCACTAGCATCTTTCTGATCTATCCACTAGGTCAGCACAGTTGGTTCTTCGCACCATCA 171002 || | | | || || || |||||||| || || |||||||||| ||||| Sbjct 3061451 TTTGTTTCCGTATTCCTTATTTATCCACTGGGACAATCTGGTTGGTTCTTTGCACCGAGT 3061392 Query 171003 TTCGGTGTCGCAGCAATTTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTACA 171062 || || || ||||| || ||||| | ||| | ||| | ||||| || || || || Sbjct 3061391 TTTGGCGTAGCAGCTATATTTCGATTCATCCTTTTCTTCCAAGGATTTCATAATTGGACG 3061332 Query 171063 TTGAATCCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTATTATGTGCC 171122 ||||| || ||||| |||||||| ||||| ||| || |||||| ||| | |||| || Sbjct 3061331 TTGAACCCCTTTCATATGATGGGAGTTGCCGGAGTATTAGGTGCAGCTCTCCTATGCGCT 3061272 Query 171123 ATTCATGGTGCAACAGTGCAGAACACATTGTAT--GAAGACACATCAGTTTATACTGATA 171180 |||||||| || || || |||| ||| | ||| |||| || |||| Sbjct 3061271 ATTCATGGGGCTAC--TGTAGAAAACACTCTATTCGAAG------------ATGGTGAT- 3061227 Query 171181 ATAAAATTCAAAGCACAACATTCCGTGCCTTTGATCCTACACAGGAAGAAGAAACTTACA 171240 | |||| || ||||| || ||| | || || || | ||||||||||| Sbjct 3061226 ----GGTGCAAA----TACCTTCCGAGCTTTTAACCCCACTCAAGCGGAAGAAACTTATT 3061175 Query 171241 GTATGATTACAGCAAACAGATTCTGGTCACAGATATTTGGTATTGCTTTCTCTAACAAAA 171300 ||| | || || ||| | || ||||| || || |||||| ||||||| || || ||| Sbjct 3061174 CAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTTGGTGTTGCTTTTTCCAATAAAC 3061115 Query 171301 GATTTTTACACTTCCTTATGTTGTTCGTTCCTGTCATGGGTATGTGGACATCATCTATAG 171360 | | ||||| ||| ||||| | || || || |||| ||| | |||| |||| | Sbjct 3061114 GTTGGTTACATTTCTTTATGCTATTTGTACCCGTCACCGGTTTATGGATGAGTGCTATTG 3061055 Query 171361 GTATCGTAGGTCTAGCACTTAACCTCAGAGCATACGATTTTGTATCTCAAGAGATAAGAG 171420 | | || || || || || ||||| | || || || || || || || || || | | Sbjct 3061054 GCGTAGTTGGCCTGGCTCTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAAATCCGTG 3060995 Query 171421 CAGCAGAAGACCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGTA 171480 |||| ||||| || || || |||||||||||||| || ||||| ||| | || || |||| Sbjct 3060994 CAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACGAGGGTA 3060935 Query 171481 TGAGAGCATGGATGTCA--TCAGTTGACCAACCACATGAGAACTTCGTATTCCCAGAAGA 171538 | | || |||||| || |||| || || || ||||| || | ||||||| || || Sbjct 3060934 TTCGTGCGTGGATGGCAGCTCAG--GATCAGCCTCATGAAAATCTTATATTCCCTGAGGA 3060877 Query 171539 AGTGTTACCAAGAGGTAACGCACTTTAA 171566 || ||||| | || ||||| |||||| Sbjct 3060876 GGTTCTACCACGTGGAAACGCTCTTTAA 3060849 >seq122 Length=273706 Score = 89.7 bits (98), Expect = 6e-13 Identities = 72/87 (83%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 155018 TGGTGCAGATGTATGTCATCTAAACTTACATAAAACATTCTGTATTCCACATGGAGGTGG 155077 ||| |||||||| |||||||| ||| | || || ||||| || ||||||||||| || || Sbjct 135513 TGGAGCAGATGTTTGTCATCTTAACCTTCACAAGACATTTTGCATTCCACATGGTGGAGG 135572 Query 155078 AGGTCCTGGCGTAGGTCCTATAGGTGT 155104 ||||||||| | |||||||| ||||| Sbjct 135573 CGGTCCTGGCATGGGTCCTATTGGTGT 135599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579208274900000