Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oropetium_20thomaeum_20[genbank_20GCA_5F001182835.1_202015-07-20] 625 sequences; 243,174,629 total letters Query= NC_015281.1 Length=179563 Score E Sequences producing significant alignments: (Bits) Value seq15 526 2e-144 seq72 147 3e-30 seq28 91.5 2e-13 >seq15 Length=3529114 Score = 526 bits (582), Expect = 2e-144 Identities = 729/1017 (72%), Gaps = 8/1017 (1%) Strand=Plus/Minus Query 169307 TTCGATGTTCTCGATGACTGGCTCAAACGCGACCGCTTTGTATTCATTGGTTGGTCTGGT 169366 || ||| || | || |||||| | | | ||||| || || || | || ||||| || Sbjct 3061865 TTTGATATTATGGACGACTGGTTACGAAGGGACCGTTTCGTTTTTGTAGGATGGTCCGGC 3061806 Query 169367 CTACTTCTTCTTCCCACTGCCTATCTTGCTATTGGAGGGTGGCTCACTGGTACAGCGTTT 169426 ||| | || |||| ||| ||| | ||| | || || ||| | || || || | ||| Sbjct 3061805 CTATTGCTCTTTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACTACTTTT 3061746 Query 169427 GTTACTTCCTGGTACACCCACGGACTCGCTTCCAGTTACT---TAGAAGGCGCTAACTTC 169483 || ||||| ||||| ||||| ||| | ||| |||| || | ||||| || ||| Sbjct 3061745 GTAACTTCTTGGTATACCCATGGATTGGCT---AGTTCCTATTTGGAAGGTTGCAATTTC 3061689 Query 169484 CTCACTGCTGCTGTCAGTACACCTGCTGACGCTATGGGACACTCACTGCTCTTGCTATGG 169543 | || || || || || |||||| | | | | |||||| || | | |||||| Sbjct 3061688 TTAACGGCGGCAGTTTCCACCCCTGCTAATAGTTTAGCACACTCTTTGTTGCTACTATGG 3061629 Query 169544 GGTCCAGAAGCACAAGGCGATTTCGTTCGCTGGTGTCAATTGGGTGGTCTCTGGAACTTT 169603 || || ||||||||||| ||||| ||| ||||| ||||| || ||||| |||| ||| Sbjct 3061628 GGACCGGAAGCACAAGGGGATTTTACTCGTTGGTGCCAATTAGGGGGTCTGTGGACTTTT 3061569 Query 169604 GTAGCACTTCATGGTGCATTTGCATTGATTGGTTTCATGCTTAGGCAGTTTGAATTGGC- 169662 || || || ||||| || |||||| | || ||||||||| | | || |||||| | || Sbjct 3061568 GTCGCTCTCCATGGGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCT 3061509 Query 169663 ACGTCTTATTGGCATCCGTCCTTATAATGCTATTGCATTCTCTGGTCCTATTGCTGTATT 169722 | |||| || | || ||||||||||| ||| ||||||||||||| || ||||| || Sbjct 3061508 AGGTCTG-TTCAATTGCGGCCTTATAATGCAATTTCATTCTCTGGTCCAATCGCTGTTTT 3061450 Query 169723 TGTCAGTGTCTTTCTTATCTACCCACTTGGACAGTCCTCATGGTTCTTTGCTCCCTCCTT 169782 ||| || || ||||| || ||||| ||||| || ||||||||||| || || Sbjct 3061449 TGTTTCCGTATTCCTTATTTATCCACTGGGACAATCTGGTTGGTTCTTTGCACCGAGTTT 3061390 Query 169783 TGGAGTATCAGCAATCTTCAGGTTCCTGTTGTTCCTGCAAGGATTCCACAACTGGACGTT 169842 ||| ||| |||| || || | ||| | | ||| | |||||||| || || |||||||| Sbjct 3061389 TGGCGTAGCAGCTATATTTCGATTCATCCTTTTCTTCCAAGGATTTCATAATTGGACGTT 3061330 Query 169843 GAATCCATTCCACATGATGGGTGTAGCAGGAATCTTGGGCGGAGCATTGCTTTCTGCTAT 169902 ||| || || || |||||||| || || ||| | || || | ||| | || | ||||| Sbjct 3061329 GAACCCCTTTCATATGATGGGAGTTGCCGGAGTATTAGGTGCAGCTCTCCTATGCGCTAT 3061270 Query 169903 CCATGGTGTTACAGTAGAGAACACATTGTATGAAGACGGTGAGCAGGCAAATACTTTCAA 169962 ||||| | ||| ||||| ||||| | | ||||| ||||| |||||||| ||| Sbjct 3061269 TCATGGGGCTACTGTAGAAAACACTCTATTCGAAGATGGTGATGGTGCAAATACCTTCCG 3061210 Query 169963 GGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTG 170022 || ||| | | || || | ||||| |||||||| |||||||| || |||||||| || Sbjct 3061209 AGCTTTTAACCCCACTCAAGCGGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTG 3061150 Query 170023 GTCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGTTGGCTTCATTTTTTCATGTTGTT 170082 ||| || ||||| ||| |||| ||||| || || |||||| | ||||| || ||| | || Sbjct 3061149 GTCCCAAATCTTTGGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATT 3061090 Query 170083 TGTGCCTGTTATGGGTCTTTGGACATCCTCTATTGGCATTATTGGCCTTGCTCTCAATCT 170142 ||| || || | ||| | |||| |||||||| | ||||||| ||||| || || Sbjct 3061089 TGTACCCGTCACCGGTTTATGGATGAGTGCTATTGGCGTAGTTGGCCTGGCTCTGAACCT 3061030 Query 170143 TCGTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGAC 170202 ||||| || || ||||| ||||| ||| | ||||| |||||||| ||||||||||| Sbjct 3061029 ACGTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGAC 3060970 Query 170203 CTTCTACACCAAAAACATCCTATTGAATGAAGGACTTCGTGCATGGTTGGCACCTGCTGA 170262 |||||||||||||| || || || || || || ||||||| ||| ||||| || || Sbjct 3060969 TTTCTACACCAAAAATATTCTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGA 3060910 Query 170263 TCAACCACATGAAAACTTCATCTTCCCAGAAGAAGTTCTTCCGAGAGGTAACGCACT 170319 ||| || |||||||| | || ||||| || || ||||| || | || ||||| || Sbjct 3060909 TCAGCCTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 3060853 >seq72 Length=1231634 Score = 147 bits (162), Expect = 3e-30 Identities = 201/278 (72%), Gaps = 2/278 (1%) Strand=Plus/Plus Query 169557 AAGGCGATTTCGTTCGCTGGTGTCAATTGGGTGGTCTCTGGAACTTTGTAGCACTTCATG 169616 |||| ||||| ||| ||||| ||||| || ||||| |||| ||||| || || |||| Sbjct 291129 AAGGGGATTTTACTCGTTGGTGCCAATTAGGGGGTCTGTGGACTTTTGTCGCTCTCCATG 291188 Query 169617 GTGCATTTGCATTGATTGGTTTCATGCTTAGGCAGTTTGAATTGGC-ACGTCTTATTGGC 169675 | || |||||| | || ||||||||| | | || |||||| | || | |||| || Sbjct 291189 GGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTAGGTCTG-TTCAA 291247 Query 169676 ATCCGTCCTTATAATGCTATTGCATTCTCTGGTCCTATTGCTGTATTTGTCAGTGTCTTT 169735 | || ||||||||||| ||| |||||| |||||| || ||||| ||||| || || Sbjct 291248 TTGCGGCCTTATAATGCAATTTCATTCTTTGGTCCAATCGCTGTTTTTGTTTCCGTATTC 291307 Query 169736 CTTATCTACCCACTTGGACAGTCCTCATGGTTCTTTGCTCCCTCCTTTGGAGTATCAGCA 169795 ||||| || ||||| ||||| || ||||||||||| || | ||| ||| |||| Sbjct 291308 CTTATTTATCCACTGGGACAATCTGGTTGGTTCTTTGCACCGAGTTCTGGCGTAGCAGCT 291367 Query 169796 ATCTTCAGGTTCCTGTTGTTCCTGCAAGGATTCCACAA 169833 || || | ||| | | ||| | |||||||| || || Sbjct 291368 ATATTTTGATTCATCCTTTTCTTCCAAGGATTTCATAA 291405 >seq28 Length=2533697 Score = 91.5 bits (100), Expect = 2e-13 Identities = 142/202 (70%), Gaps = 12/202 (6%) Strand=Plus/Plus Query 169505 CCTGCTGACGCTATGGGACACTCACTGCTCTTGCTATGGGGTCCAGAAGCACAAGGCGAT 169564 |||||||| | | | |||||| || | |||||||| || ||||||||||| ||| Sbjct 2401577 CCTGCTGATAGTTTAGCACACTCTTTGTTGCCACTATGGGGACCGGAAGCACAAGGGGAT 2401636 Query 169565 TTCGTTCGCTGGTGTCAATTGGGTGGTCTCTGGAACTTTGTAGCACTTCATGGTGCATTT 169624 || ||| ||||||||||| || || ||||| || | ||||| || ||| Sbjct 2401637 TTTACTCGTTGGTGTCAATTAGGGGG----------TTTGTCGCTTTCCATGGGGCTTTT 2401686 Query 169625 GCATTGATTGGTTTCATGCTTAGGCAGTTTGAATTGGCAC-GTCTTATTGGCATCCGTCC 169683 ||| | || ||||||||| | | || |||||| | || | ||| | || | || || Sbjct 2401687 GCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCAGTC-TGTTCAATTGCGGCC 2401745 Query 169684 TTATAATGCTATTGCATTCTCT 169705 ||||||||| ||| |||||||| Sbjct 2401746 TTATAATGCAATTTCATTCTCT 2401767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 574469111925000