Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oropetium_20thomaeum_20[genbank_20GCA_5F001182835.1_202015-07-20] 625 sequences; 243,174,629 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq15 376 3e-99 seq122 104 3e-17 >seq15 Length=3529114 Score = 376 bits (416), Expect = 3e-99 Identities = 712/1044 (68%), Gaps = 33/1044 (3%) Strand=Plus/Minus Query 172951 TTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 173010 |||||| || | |||||||||||| || || |||||||| || | |||||||| || Sbjct 3061865 TTTGATATTATGGACGACTGGTTACGAAGGGACCGTTTCGTTTTTGTAGGATGGTCCGGC 3061806 Query 173011 CTTTTACTTCTACCTTGTGCTTACCTTTCTATCGGTGGTTGGTTCTTAGGAACTACCTTC 173070 || || || | ||||||||||| | || | || |||||||| ||| ||||| || Sbjct 3061805 CTATTGCTCTTTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACTACTTTT 3061746 Query 173071 GTTACATCATGGTATACACATGGTATTGCATCTTCATATCTTGAAGGAGCAAACTTTTTA 173130 || || || |||||||| ||||| | || ||| ||| | ||||| || || ||| Sbjct 3061745 GTAACTTCTTGGTATACCCATGGATTGGCTAGTTCCTATTTGGAAGGTTGCAATTTCTTA 3061686 Query 173131 ACAGCAGCAGTCTCCACACCTGGCGACGCAATGGGT---CATAGTCTT--CTGTTCCTTT 173185 || || ||||| ||||| |||| ||| | | || | |||| || | || | Sbjct 3061685 ACGGCGGCAGTTTCCACCCCTG-----CTAATAGTTTAGCACACTCTTTGTTGCTACTAT 3061631 Query 173186 GGGGACCTGAAGCACAAGGTTCATTCGTACGTTGGTTACAACTCGGAGGACTATGGAACT 173245 ||||||| ||||||||||| || ||||||| ||| | || || || |||| | Sbjct 3061630 GGGGACCGGAAGCACAAGGGGATTTTACTCGTTGGTGCCAATTAGGGGGTCTGTGGACTT 3061571 Query 173246 TTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCCGTCAGTTTGAGATCG 173305 |||| || | ||||| | |||| ||| |||||||||||| | ||||| ||||| | | Sbjct 3061570 TTGTCGCTCTCCATGGGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTG 3061511 Query 173306 C-AGGACTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGTC 173364 | ||| | ||| | | ||||| || ||| | ||||||||| | ||||| || Sbjct 3061510 CTAGGTC-TGTTCAATTGCGGCCTTATAATGCAATTTCATTCTCTGGTCCAATCGCTGTT 3061452 Query 173365 TTCACTAGCATCTTTTTAATCTACCCACTAGGGCAGCACAGTTGGTTCTTCGCACCTTCA 173424 || | | | || | || || ||||| || || |||||||||| ||||| Sbjct 3061451 TTTGTTTCCGTATTCCTTATTTATCCACTGGGACAATCTGGTTGGTTCTTTGCACCGAGT 3061392 Query 173425 TTCGGTGTCGCAGCAATCTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTACA 173484 || || || ||||| || ||||| | ||| | ||| | ||||| || || || || Sbjct 3061391 TTTGGCGTAGCAGCTATATTTCGATTCATCCTTTTCTTCCAAGGATTTCATAATTGGACG 3061332 Query 173485 TTGAATCCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTACTATGTGCC 173544 ||||| || ||||| |||||||| ||||| ||| || |||||| ||| | ||||| || Sbjct 3061331 TTGAACCCCTTTCATATGATGGGAGTTGCCGGAGTATTAGGTGCAGCTCTCCTATGCGCT 3061272 Query 173545 ATTCATGGTGCAACAGTGCAGAACACATTGTATGAAGACACATCACAATATACTGAAGGT 173604 |||||||| || || || |||| ||| | ||| || || || ||| ||| Sbjct 3061271 ATTCATGGGGCTAC--TGTAGAAAACACTCTAT---------TC-GAAGATGGTGATGGT 3061224 Query 173605 AAGATTCAATCCACAACTTTCAGAGCATTTGATCCTACACAGGAAGAAGAAACTTATAGT 173664 | | || ||| |||| ||| | || || || | |||||||||||| Sbjct 3061223 ---------GCAAATACCTTCCGAGCTTTTAACCCCACTCAAGCGGAAGAAACTTATTCA 3061173 Query 173665 ATGATTACAGCGAACAGATTCTGGTCACAGATATTTGGTATCGCATTTTCAAACAAAAGA 173724 ||| | || || ||| | || ||||| || || |||||| | || ||||| || ||| | Sbjct 3061172 ATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTTGGTGTTGCTTTTTCCAATAAACGT 3061113 Query 173725 TTTTTACACTTCCTCATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCCATAGGT 173784 | ||||| ||| | ||| | || ||||| |||| ||| | |||| | || || Sbjct 3061112 TGGTTACATTTCTTTATGCTATTTGTACCCGTCACCGGTTTATGGATGAGTGCTATTGGC 3061053 Query 173785 ATCGTAGGTCTTGCACTTAACCTTAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCA 173844 | || || || || || ||||| | || || ||||| || || || || || | ||| Sbjct 3061052 GTAGTTGGCCTGGCTCTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCA 3060993 Query 173845 GCAGAAGATCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGTATG 173904 || |||||||| || || |||||||||||||| || ||||| ||| | || || ||||| Sbjct 3060992 GCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACGAGGGTATT 3060933 Query 173905 AGAGCATGGATGTCATCTGTAGATCAACCACATGAGAACTTCGTATTTCCAGAAGAAGTG 173964 | || |||||| || || ||||| || ||||| || | |||| || || || || Sbjct 3060932 CGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCCTGAGGAGGTT 3060873 Query 173965 TTACCAAGAGGTAACGCACTTTAA 173988 ||||| | || ||||| |||||| Sbjct 3060872 CTACCACGTGGAAACGCTCTTTAA 3060849 >seq122 Length=273706 Score = 104 bits (114), Expect = 3e-17 Identities = 93/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 159663 ACAGGTAGGTCTAGCAAAACCATGTGACTATGGTGCAGATGTATGTCATCTAAACTTACA 159722 |||||| || || ||| ||| || | ||| |||||||| |||||||| ||| | || Sbjct 135483 ACAGGTTGGGTTAACAAGCCCAGGTTTCATTGGAGCAGATGTTTGTCATCTTAACCTTCA 135542 Query 159723 TAAGACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGTGT 159779 |||||||| || ||||||||||| || || ||||||||| | |||||||||||||| Sbjct 135543 CAAGACATTTTGCATTCCACATGGTGGAGGCGGTCCTGGCATGGGTCCTATTGGTGT 135599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588046605850000