Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oropetium_20thomaeum_20[genbank_20GCA_5F001182835.1_202015-07-20] 625 sequences; 243,174,629 total letters Query= NC_015285.1 Length=174285 Score E Sequences producing significant alignments: (Bits) Value seq15 527 7e-145 seq72 168 7e-37 >seq15 Length=3529114 Score = 527 bits (584), Expect = 7e-145 Identities = 732/1020 (72%), Gaps = 4/1020 (0%) Strand=Plus/Minus Query 163621 TTTGATGTCCTGGATGACTGGCTTAAGC-GCGATCGTTTCGTATTTATTGGTTGGTCTGG 163679 |||||| | |||| |||||| ||| | | || |||||||| ||| | || ||||| || Sbjct 3061865 TTTGATATTATGGACGACTGG-TTACGAAGGGACCGTTTCGTTTTTGTAGGATGGTCCGG 3061807 Query 163680 ATTACTACTTCTTCCCACTGCTTATATGGCAATTGGTGGCTGGCTTACTGGTACAACTTT 163739 || | || |||| ||||||| | || | || || ||| |||| || || ||||| Sbjct 3061806 CCTATTGCTCTTTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACTACTTT 3061747 Query 163740 CGTTACGTCGTGGTACACCCATGGACTGGCAACTTCCTATCTTGAGGGTGCTAATTTTCT 163799 || || || ||||| ||||||||| |||| | ||||||| | || ||| ||||| | Sbjct 3061746 TGTAACTTCTTGGTATACCCATGGATTGGCTAGTTCCTATTTGGAAGGTTGCAATTTCTT 3061687 Query 163800 CACAGCGGCTGTGTCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTTCTCTGGGG 163859 || ||||| || || || |||||| | | | | || ||| | | || || ||||| Sbjct 3061686 AACGGCGGCAGTTTCCACCCCTGCTAATAGTTTAGCACACTCTTTGTTGCTACTATGGGG 3061627 Query 163860 TCCTGAGGCTCAGGGCGATTTCGTCCGCTGGATCCAACTTGGGGGACTCTGGAATTTTGT 163919 || || || || || ||||| || ||| |||| | ||||| || |||| |||||| Sbjct 3061626 ACCGGAAGCACAAGGGGATTTTACTCGTTGGTGCCAATTAGGGGGTCTGTGGACTTTTGT 3061567 Query 163920 GGCACTCCACGGAGCCTTTGCTCTCATTGGTTTCATGCTTCGGCAATTTGAACTTGCTCG 163979 || ||||| || || ||||| || || ||||||||| | || ||||||||||||||| | Sbjct 3061566 CGCTCTCCATGGGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTAG 3061507 Query 163980 C-CTGATTGGAATCAGACCCTACAATGCGATTGCTTTCTCTGGTCCTATTGCTGTCTTCG 164038 ||| || | | | || || ||||| ||| | ||||||||||| || ||||| || | Sbjct 3061506 GTCTG-TTCAATTGCGGCCTTATAATGCAATTTCATTCTCTGGTCCAATCGCTGTTTTTG 3061448 Query 164039 TTAGTGTCTTTCTCATCTACCCTCTGGGTCAATCAAGTTGGTTCTTCGCTCCATCTTTTG 164098 || || || || || || || ||||| ||||| |||||||||| || || ||||| Sbjct 3061447 TTTCCGTATTCCTTATTTATCCACTGGGACAATCTGGTTGGTTCTTTGCACCGAGTTTTG 3061388 Query 164099 GAGTGGCAGCAATCTTCAGATTCCTCTTATTCCTTCAAGGATTTCATAACTGGACTTTGA 164158 | || ||||| || || ||||| || | ||| | |||||||||||||| ||||| |||| Sbjct 3061387 GCGTAGCAGCTATATTTCGATTCATCCTTTTCTTCCAAGGATTTCATAATTGGACGTTGA 3061328 Query 164159 ACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGCGGAGCATTGCTATCTGCTATTC 164218 ||||||| ||||||||||||||||| || || |||| | ||| | |||| ||||||| Sbjct 3061327 ACCCCTTTCATATGATGGGAGTTGCCGGAGTATTAGGTGCAGCTCTCCTATGCGCTATTC 3061268 Query 164219 ACGGAGTCACAGTTGAAAATACATTGTATGAAGATGGAGAACAAGCAAACACCTTTAAGG 164278 | || | || || ||||| || | | |||||||| || ||||| ||||| | Sbjct 3061267 ATGGGGCTACTGTAGAAAACACTCTATTCGAAGATGGTGATGGTGCAAATACCTTCCGAG 3061208 Query 164279 CGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGT 164338 | ||| | | || || | ||||| |||||||| |||||||| || |||||||| |||| Sbjct 3061207 CTTTTAACCCCACTCAAGCGGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGT 3061148 Query 164339 CGCAGATCTTCGGTGTTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTG 164398 | || ||||| |||||||| ||||| || || || ||| | ||||| || ||| | |||| Sbjct 3061147 CCCAAATCTTTGGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTTG 3061088 Query 164399 TGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGCCTTGCTCTCAATCTTC 164458 | || || | ||| |||||| |||||||| | ||||||| ||||| || || | Sbjct 3061087 TACCCGTCACCGGTTTATGGATGAGTGCTATTGGCGTAGTTGGCCTGGCTCTGAACCTAC 3061028 Query 164459 GTGCTTACGATTTTGTAAGTCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTCGAGACTT 164518 |||| || || || || || || || | ||||| ||||||||||| || ||||||| Sbjct 3061027 GTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTT 3060968 Query 164519 TCTATACCAAGAACATCTTATTGAACGAAGGACTCCGTGCATGGTTAGCACCAGTTGACC 164578 |||| ||||| || || | || ||||| || | ||||| ||| | ||| | || | Sbjct 3060967 TCTACACCAAAAATATTCTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGATC 3060908 Query 164579 AGCCAGGAGAACGGTTTGTCTTCCCAGAAGAAGTACTGCCGAGAGGTAATGCGCTTTAAT 164638 |||| ||| || | ||||| || || || || || | || || || ||||||| Sbjct 3060907 AGCCTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAAT 3060848 >seq72 Length=1231634 Score = 168 bits (186), Expect = 7e-37 Identities = 205/277 (74%), Gaps = 2/277 (1%) Strand=Plus/Plus Query 163885 CGCTGGATCCAACTTGGGGGACTCTGGAATTTTGTGGCACTCCACGGAGCCTTTGCTCTC 163944 || ||| |||| | ||||| || |||| |||||| || ||||| || || ||||| || Sbjct 291143 CGTTGGTGCCAATTAGGGGGTCTGTGGACTTTTGTCGCTCTCCATGGGGCTTTTGCACTA 291202 Query 163945 ATTGGTTTCATGCTTCGGCAATTTGAACTTGCTCGC-CTGATTGGAATCAGACCCTACAA 164003 || ||||||||| | || ||||||||||||||| | ||| || | | | || || || Sbjct 291203 ATAGGTTTCATGTTACGTCAATTTGAACTTGCTAGGTCTG-TTCAATTGCGGCCTTATAA 291261 Query 164004 TGCGATTGCTTTCTCTGGTCCTATTGCTGTCTTCGTTAGTGTCTTTCTCATCTACCCTCT 164063 ||| ||| | |||| |||||| || ||||| || ||| || || || || || || || Sbjct 291262 TGCAATTTCATTCTTTGGTCCAATCGCTGTTTTTGTTTCCGTATTCCTTATTTATCCACT 291321 Query 164064 GGGTCAATCAAGTTGGTTCTTCGCTCCATCTTTTGGAGTGGCAGCAATCTTCAGATTCCT 164123 ||| ||||| |||||||||| || || || ||| || ||||| || || ||||| | Sbjct 291322 GGGACAATCTGGTTGGTTCTTTGCACCGAGTTCTGGCGTAGCAGCTATATTTTGATTCAT 291381 Query 164124 CTTATTCCTTCAAGGATTTCATAACTGGACTTTGAAC 164160 | | ||| | |||||||||||||| | | ||||||| Sbjct 291382 CCTTTTCTTCCAAGGATTTCATAATTCTATTTTGAAC 291418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557579643875000