Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oropetium_20thomaeum_20[genbank_20GCA_5F001182835.1_202015-07-20] 625 sequences; 243,174,629 total letters Query= NC_015288.1 Length=191195 Score E Sequences producing significant alignments: (Bits) Value seq15 616 2e-171 seq72 197 2e-45 seq28 86.0 8e-12 >seq15 Length=3529114 Score = 616 bits (682), Expect = 2e-171 Identities = 743/1008 (74%), Gaps = 2/1008 (0%) Strand=Plus/Minus Query 183193 GATGACTGGGTTAAACGCGATCGCTTTGTCTTTGTGGGCTGGTCTGGACTCCTACTTCTT 183252 || |||||| | | | || || || || ||||| || ||||| || || | || || Sbjct 3061853 GACGACTGGTTACGAAGGGACCGTTTCGTTTTTGTAGGATGGTCCGGCCTATTGCTCTTT 3061794 Query 183253 CCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTTACGAGTTGG 183312 || ||||||| | || | || |||||| |||| || || ||||||| || |||| Sbjct 3061793 CCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACTACTTTTGTAACTTCTTGG 3061734 Query 183313 TATACCCATGGACTTGCTTCTTCCTATCTTGAAGGTGCTAACTTTCTTA-CGGCAGCTGT 183371 |||||||||||| | ||| ||||||| | |||||| || ||||||| |||| || || Sbjct 3061733 TATACCCATGGATTGGCTAGTTCCTATTTGGAAGGTTGCAA-TTTCTTAACGGCGGCAGT 3061675 Query 183372 CTCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTGTTACTTTGGGGTCCTGAGTCTCA 183431 || || |||||| | | | | || ||| | || |||| ||||| || || | || Sbjct 3061674 TTCCACCCCTGCTAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGACCGGAAGCACA 3061615 Query 183432 AGGGGACTTTCAACGCTGGTGCCAACTTGGGGGACTCTGGAATTTTGTGGCACTCCACGG 183491 |||||| ||| || ||||||||| | ||||| || |||| |||||| || ||||| || Sbjct 3061614 AGGGGATTTTACTCGTTGGTGCCAATTAGGGGGTCTGTGGACTTTTGTCGCTCTCCATGG 3061555 Query 183492 TGCCTTTGCTCTCATTGGTTTCATGCTTCGACAGTTTGAACTTGCTCGCTTGATTGGTAT 183551 || ||||| || || ||||||||| | || || |||||||||||| | | || | Sbjct 3061554 GGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTAGGTCTGTTCAATT 3061495 Query 183552 CCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGTGTATTCCT 183611 || ||||| ||||| ||| | ||||||||||| || ||||||||||| |||||||| Sbjct 3061494 GCGGCCTTATAATGCAATTTCATTCTCTGGTCCAATCGCTGTTTTTGTTTCCGTATTCCT 3061435 Query 183612 TATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCGGGGTAGCAGCAAT 183671 ||| ||||||||||| || ||| |||||||||||||| ||||| || |||||||| || Sbjct 3061434 TATTTATCCACTGGGACAATCTGGTTGGTTCTTTGCACCGAGTTTTGGCGTAGCAGCTAT 3061375 Query 183672 CTTTAGATTCCTATTGTTCCTTCAGGGTTTCCACAACTGGACGTTAAACCCCTTCCATAT 183731 ||| ||||| | | ||| | || || || || || |||||||| |||||||| ||||| Sbjct 3061374 ATTTCGATTCATCCTTTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCCTTTCATAT 3061315 Query 183732 GATGGGAGTTGCTGGTATACTAGGAGGAGCACTACTCAGTGCTATCCATGGTGTCACAGT 183791 |||||||||||| || || |||| | ||| || || | ||||| ||||| | || || Sbjct 3061314 GATGGGAGTTGCCGGAGTATTAGGTGCAGCTCTCCTATGCGCTATTCATGGGGCTACTGT 3061255 Query 183792 AGAGAATACATTGTATGAAGATGGAGAACAAGCAAACACATTCAAGGCATTTGATTCCAC 183851 ||| || || | | |||||||| || ||||| || ||| || ||| | |||| Sbjct 3061254 AGAAAACACTCTATTCGAAGATGGTGATGGTGCAAATACCTTCCGAGCTTTTAACCCCAC 3061195 Query 183852 TCAAGAAGAAGAGACGTATTCTATGGTTACAGCGAATCGTTTCTGGTCACAAATCTTCGG 183911 ||||| ||||| || ||||| ||||| || || || || || ||||| |||||||| || Sbjct 3061194 TCAAGCGGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTTGG 3061135 Query 183912 GGTTGCGTTTAGCAATAAGCGTTGGTTGCACTTCTTTATGTTGTTTGTTCCTGTCATGGG 183971 ||||| ||| |||||| |||||||| || ||||||||| | ||||| || |||| || Sbjct 3061134 TGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTTGTACCCGTCACCGG 3061075 Query 183972 TCTTTGGGTCTCTTCTATTGGCATCATTGGGCTTGCTCTTAATCTTCGTGCTTATGATTT 184031 | | ||| | | |||||||| | |||| || ||||| || || ||||| ||||| || Sbjct 3061074 TTTATGGATGAGTGCTATTGGCGTAGTTGGCCTGGCTCTGAACCTACGTGCCTATGACTT 3061015 Query 184032 TGTAAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACGTTCTACACAAAGAA 184091 || || || ||| | ||||| |||||||| ||||||||||| |||||||| || || Sbjct 3061014 CGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAA 3060955 Query 184092 CATACTTCTTAATGAAGGACTACGTGCATGGTTAGCACCTTCTGATCAACCACATGAGAA 184151 || ||| | || || || | ||||| ||| | ||| || ||||| || ||||| || Sbjct 3060954 TATTCTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGAAAA 3060895 Query 184152 TTTTATATTTCCAGAGGAGGTATTACCTAGAGGCAATGCTCTTTGATG 184199 | ||||||| || |||||||| |||| | || || ||||||| ||| Sbjct 3060894 TCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAATG 3060847 >seq72 Length=1231634 Score = 197 bits (218), Expect = 2e-45 Identities = 210/277 (76%), Gaps = 0/277 (0%) Strand=Plus/Plus Query 183431 AAGGGGACTTTCAACGCTGGTGCCAACTTGGGGGACTCTGGAATTTTGTGGCACTCCACG 183490 ||||||| ||| || ||||||||| | ||||| || |||| |||||| || ||||| | Sbjct 291129 AAGGGGATTTTACTCGTTGGTGCCAATTAGGGGGTCTGTGGACTTTTGTCGCTCTCCATG 291188 Query 183491 GTGCCTTTGCTCTCATTGGTTTCATGCTTCGACAGTTTGAACTTGCTCGCTTGATTGGTA 183550 | || ||||| || || ||||||||| | || || |||||||||||| | | || Sbjct 291189 GGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTAGGTCTGTTCAAT 291248 Query 183551 TCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGTGTATTCC 183610 | || ||||| ||||| ||| | |||| |||||| || ||||||||||| ||||||| Sbjct 291249 TGCGGCCTTATAATGCAATTTCATTCTTTGGTCCAATCGCTGTTTTTGTTTCCGTATTCC 291308 Query 183611 TTATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCGGGGTAGCAGCAA 183670 |||| ||||||||||| || ||| |||||||||||||| |||| || |||||||| | Sbjct 291309 TTATTTATCCACTGGGACAATCTGGTTGGTTCTTTGCACCGAGTTCTGGCGTAGCAGCTA 291368 Query 183671 TCTTTAGATTCCTATTGTTCCTTCAGGGTTTCCACAA 183707 | ||| ||||| | | ||| | || || || || || Sbjct 291369 TATTTTGATTCATCCTTTTCTTCCAAGGATTTCATAA 291405 >seq28 Length=2533697 Score = 86.0 bits (94), Expect = 8e-12 Identities = 157/231 (68%), Gaps = 22/231 (10%) Strand=Plus/Plus Query 183411 ACTTTGGGGTCCTGAGTCTCAAGGGGACTTTCAACGCTGGTGCCAACTTGGGGGACTCTG 183470 ||| ||||| || || | |||||||| ||| || ||||| ||| | ||||| Sbjct 2401609 ACTATGGGGACCGGAAGCACAAGGGGATTTTACTCGTTGGTGTCAATTAGGGGG------ 2401662 Query 183471 GAATTTTGTGGCACTCCACGGTGCCTTTGCTCTCATTGGTTTCATGCTTCGACAGTTTGA 183530 ||||| || |||| || || ||||| || || ||||||||| | || || ||||| Sbjct 2401663 ----TTTGTCGCTTTCCATGGGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGA 2401718 Query 183531 ACTTGCTCGCTTGATTGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGC 183590 |||||||| | || | || ||||| ||||| ||| | |||| ||||| Sbjct 2401719 ACTTGCTCAGTCTGTTCAATTGCGGCCTTATAATGCAATTTCATTCT------CTATTTT 2401772 Query 183591 TGTTTTTGTCAGTGTATTCCTTATCTATCCACTGGGTCAGTCTTCATGGTT 183641 ||||| || |||||||| | ||||||||||| || ||| ||||| Sbjct 2401773 TGTTT---CCA---TATTCCTTTTTTATCCACTGGGACAATCTGATTGGTT 2401817 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611691221125000