Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oropetium_20thomaeum_20[genbank_20GCA_5F001182835.1_202015-07-20] 625 sequences; 243,174,629 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq12 122 1e-22 >seq12 Length=3772834 Score = 122 bits (134), Expect = 1e-22 Identities = 151/205 (74%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 || |||||||| | ||| | ||||||| || |||| | || ||| || |||| || Sbjct 2780918 CCACCTTGATCAACATAACGTGCAGTATCATTGAAAACACGTAGCATAGGAACAAGTCCG 2780859 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || || | ||||| ||||| |||||||||||| |||||| |||||| |||||| Sbjct 2780858 TTAGAAGTCCCATTAGTTCCTCGGATATAACTTCCAGTAGCTCGAATATTATGAATTGAG 2780799 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACA--CCGTTTAAGGGTATCATAAA 48537 ||||| || || || || |||| ||| |||||| ||| ||| |||||||||| Sbjct 2780798 ATACCGATTCCTCCAGCAGTTTTGCTTATCGCAGCACATTCCGA--AAGAGTATCATAAA 2780741 Query 48538 TTCCTTCTATACTATCATCTATCAT 48562 |||| || |||||||||||| |||| Sbjct 2780740 TTCCCTCAATACTATCATCTTTCAT 2780716 Score = 89.7 bits (98), Expect = 6e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48618 GTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAA 48677 ||||| || |||||| ||||||| || || | || | |||||| | | |||| Sbjct 2780575 GTTGGGGAAGCATGAGTAAACCAGCGCTGAGACATCATGTGGTATGTTCTGACAGCAGAT 2780516 Query 48678 TCTATATCCCATTGATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCA 48737 || ||||| | ||||||||| | || || | ||||||||||| ||| || ||||| Sbjct 2780515 TCAATATCATCCTTATGTATACCAACTGAAACCCTCATTAACATATGTTGTGGCCTTTCC 2780456 Query 48738 ACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAG 48797 |||| | | || |||||| || ||||| | || | ||| |||||||||||||| Sbjct 2780455 ACAACCATTCCACCTACTTTCAACAGGTATGACCTCTCAAGTGTCTTAAAACCAAAATAA 2780396 Query 48798 TTGTATGAAAAGTCGTTATCATTAATAAT 48826 | ||| ||| || ||||| ||| || Sbjct 2780395 TCGTAGTCAAAATCTCGATCATAAATTAT 2780367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562104408525000