Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oropetium_20thomaeum_20[genbank_20GCA_5F001182835.1_202015-07-20] 625 sequences; 243,174,629 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq100 136 3e-26 seq17 116 3e-20 seq13 109 4e-18 seq403 96.9 3e-14 seq8 96.9 3e-14 seq4 91.5 1e-12 seq72 89.7 4e-12 seq80 87.8 1e-11 >seq100 Length=558633 Score = 136 bits (150), Expect = 3e-26 Identities = 451/697 (65%), Gaps = 6/697 (1%) Strand=Plus/Minus Query 551896 CTCTTCGTCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTC 551955 ||||| | | || || || || || || ||||| || | | || || || | | | Sbjct 344637 CTCTTAGGAGGCTTAGGACAGCATGTGAGAGAGCTAAGAGGACCCTATCTTCCACTGCAC 344578 Query 551956 AAACCACTATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGA 552015 | || || |||||| | || || | |||||||||||||||| |||| | ||| | | Sbjct 344577 AGACAACCATTGAAATCGACTCCCTTTTTGAGGGAATTGATTTCTATACCACCATTACCA 344518 Query 552016 GGGCCAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAAC 552075 | |||| ||||| || | || |||||||| || || || ||||| || Sbjct 344517 GAGCCAGGTTTGAGGAGCTGAACATGGACCTCTTTAGGAAGTGCATGGAGCCAGTGGAGA 344458 Query 552076 AAGTTTTAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTG 552135 || | |||||| | |||| |||| | || || ||||| |||| |||||||||| Sbjct 344457 AATGCCTTAGAGATGCCCAGATGGATATAAGCAGTGTCCATGATGTTGTCCTTGTTGGTG 344398 Query 552136 GATCTACAAGAATTCCTAAAATTCGCGAAATG-TTAAGTTCTTATTTCAATGGTAAAAAA 552194 | || || |||||||| | | ||| | || | || ||| | ||||||| || | Sbjct 344397 GTTCAACTAGAATTCCCAGAGTTCAGCAGCTGCTGCAGGACTT-TGTCAATGGAAAGGAG 344339 Query 552195 TTAAATGAAAGTG--TTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAG 552252 | || ||| | ||||||| ||||| | ||||||||| ||||| || | || || | Sbjct 344338 CT--CTGCAAGAGCATTAATCCTGATGAAGATGTTGCCTACGGTGCTGCTGTCCAGGCTG 344281 Query 552253 CTATTCTTTCTGGACAAACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTC 552312 |||| ||| |||| | | |||| || | || | || | || | |||||||| | Sbjct 344280 CTATCCTTAGTGGAGAGGGTAATGAGAAGGTGCAGGACCTTCTCCTCCTTGATGTTACCC 344221 Query 552313 CTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATA 552372 | || | |||||| | || || | ||||| | ||||| ||||| || || | Sbjct 344220 CACTGTTGCTTGGTCTTGAGACTGCAGGAGGAGTCATGACCGTGCTTATTCCGAGGAACA 344161 Query 552373 CTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTG 552432 | |||||||| || || || || || || || || || || || ||| ||| | Sbjct 344160 CCACTATTCCAACCAAGAAGGATCAGGTCTTCTCCACCTACTCTGACAACCAACCTGGAG 344101 Query 552433 TTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTA 552492 | || || ||| |||||| || || | | | || || |||| ||||| | Sbjct 344100 TGTTGATCCAGGTTTATGAAGGTGAGAGGACCCGGATGAGGGACAACAATCTCCTTGGGA 344041 Query 552493 CTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTT 552552 ||| | || || || || ||||||||| | || || || || || || || Sbjct 344040 AGTTTGAGCTATCTGGAATCCCCCCTGCTCCTAGGGGTGTCCCTCAGATGACTGTCTGTT 343981 Query 552553 TCGATATCGATGCCAATGGAATTTTGAATGTGACTGC 552589 | || || ||||||||||| ||| |||| || |||| Sbjct 343980 TTGACATTGATGCCAATGGTATTCTGAACGTCTCTGC 343944 Score = 102 bits (112), Expect = 7e-16 Identities = 100/128 (78%), Gaps = 2/128 (2%) Strand=Plus/Minus Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468 |||||||| || || || ||||| ||| | | || || || || |||||||| |||| Sbjct 344983 ACTGTACCTGCTTACTTCAATGATTCAGA--GGCAGGCGACAAAGGATGCTGGCGTTATT 344926 Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGA 550528 ||||| |||||||| | || || |||||||| ||||||||||||||| |||| || || Sbjct 344925 GCTGGTCTTAATGTCATGCGAATCATCAATGAGCCTACTGCTGCTGCAATTGCCTACGGT 344866 Query 550529 CTTGATAA 550536 ||||| || Sbjct 344865 CTTGACAA 344858 >seq17 Length=3182705 Score = 116 bits (128), Expect = 3e-20 Identities = 114/147 (78%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 || ||| | || || || ||||| || ||||| || |||||||||||| | ||| || Sbjct 197121 GTCACGAAAGCTGTGATCACTGTCCCTGCATACTTCAATGACTCACAAAGGACAGCAACG 197062 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 ||||||||||| || |||||||| | | ||||| |||||||| ||||| ||||||||| Sbjct 197061 AAAGATGCTGGCCGCATTGCTGGGTTGGAGGTTCTCCGTATTATAAATGAGCCTACTGCT 197002 Query 550511 GCTGCACTTGCATATGGACTTGATAAA 550537 || | || |||||||| |||| ||| Sbjct 197001 GCATCCCTGGCATATGGTTTTGAGAAA 196975 >seq13 Length=3725751 Score = 109 bits (120), Expect = 4e-18 Identities = 114/149 (77%), Gaps = 3/149 (2%) Strand=Plus/Minus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 ||||| | || || ||||| || || ||||| |||||| | ||| |||| ||||||| Sbjct 666907 GCAGTGGTTACAGTTCCAGCGTACTTCAATGATTCACAAAGAACAGCAACTAGAGATGCT 666848 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 || |||||||| || || | |||||||||||||| ||||| || |||||||| | ||| Sbjct 666847 GGTCGTATTGCGGGCCTGGAAGTTCTTCGTATTATAAATGAGCCAACTGCTGCATCGCTT 666788 Query 550520 GCATATGGACTTG---ATAAACATAATGA 550545 || ||||| ||| | ||| ||||||| Sbjct 666787 GCGTATGGTTTTGAGAAGAAAAATAATGA 666759 >seq403 Length=29911 Score = 96.9 bits (106), Expect = 3e-14 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 ||||| | ||||| ||||||||||| ||||| | || |||||||| || || ||||| Sbjct 23853 GCAGTGGTTACTGTTCCAGCATATTTCAATGATGCTCAGCGTCAAGCCACAAAGGATGCG 23794 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 || || |||||||| ||| | ||| | |||||||||||||| || || ||||| || Sbjct 23793 GGTCGGATTGCTGGCCTTGAGGTTGAAAGGATTATCAATGAACCGACAGCAGCTGCTCTG 23734 Query 550520 GCATATGG 550527 | ||||| Sbjct 23733 TCTTATGG 23726 >seq8 Length=4429347 Score = 96.9 bits (106), Expect = 3e-14 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 ||||| | ||||| ||||||||||| ||||| | || |||||||| || || ||||| Sbjct 1911450 GCAGTGGTTACTGTTCCAGCATATTTCAATGATGCTCAGCGTCAAGCCACAAAGGATGCG 1911391 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 || || |||||||| ||| | ||| | |||||||||||||| || || ||||| || Sbjct 1911390 GGTCGGATTGCTGGCCTTGAGGTTGAAAGGATTATCAATGAACCGACAGCAGCTGCTCTG 1911331 Query 550520 GCATATGG 550527 | ||||| Sbjct 1911330 TCTTATGG 1911323 Score = 96.9 bits (106), Expect = 3e-14 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 ||||| | ||||| ||||||||||| ||||| | || |||||||| || || ||||| Sbjct 1948155 GCAGTGGTTACTGTTCCAGCATATTTCAATGATGCTCAGCGTCAAGCCACAAAGGATGCG 1948096 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 || || |||||||| ||| | ||| | |||||||||||||| || || ||||| || Sbjct 1948095 GGTCGGATTGCTGGCCTTGAGGTTGAAAGGATTATCAATGAACCGACAGCAGCTGCTCTG 1948036 Query 550520 GCATATGG 550527 | ||||| Sbjct 1948035 TCTTATGG 1948028 Score = 89.7 bits (98), Expect = 4e-12 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 || || || ||||| ||||| || || ||||| | || ||||| |||||||| |||||| Sbjct 249204 GCTGTTATTACTGTCCCAGCTTACTTCAATGATGCTCAGCGTCAGGCTACTAAGGATGCT 249263 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 | |||||||||||||| || | | ||||||||||| || ||| | || || || Sbjct 249264 ACTAGAATTGCTGGACTTAAGGTGATGAGGATTATCAATGAGCCAACTACCGCGGCTCTG 249323 Query 550520 GCATATGGA 550528 |||||||| Sbjct 249324 TCATATGGA 249332 >seq4 Length=5694366 Score = 91.5 bits (100), Expect = 1e-12 Identities = 62/70 (89%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 930664 TTGATTTTTCTTCACCAAATATTGCCAAAGAAATGCATATTGGACATTTGCGTTCTACCA 930723 |||||||||| ||||| ||||||||||||||||||||| |||||||||| | || || | Sbjct 3375934 TTGATTTTTCATCACCCAATATTGCCAAAGAAATGCATGTTGGACATTTAAGGTCAACAA 3375993 Query 930724 TTATTGGAGA 930733 |||||||||| Sbjct 3375994 TTATTGGAGA 3376003 >seq72 Length=1231634 Score = 89.7 bits (98), Expect = 4e-12 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 || || || ||||| ||||| ||||| ||||| | || |||||||| || || ||||| Sbjct 277053 GCTGTGATTACTGTTCCAGCTTATTTCAATGATGCCCAGCGTCAAGCCACAAAGGATGCA 276994 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 || || |||||||| || ||||| | || ||||||||||| || || ||||| || Sbjct 276993 GGCCGCATTGCTGGCCTCGATGTTGAAAGGATCATCAATGAACCAACAGCAGCTGCTCTG 276934 Query 550520 GCATATGGA 550528 | |||||| Sbjct 276933 TCTTATGGA 276925 >seq80 Length=928440 Score = 87.8 bits (96), Expect = 1e-11 Identities = 138/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 390803 CAGTATTAATACCATTATCACCATATACACATTGAATTA-ATTTGTCATTGGCATTTCTT 390861 ||| || || |||| |||||||| | | | ||||| | || | || || ||||||| Sbjct 58375 CAGCATCCATGCCATCTTCACCATACAGAAACTGAATCACATCTCCCAATGA-ATTTCTT 58433 Query 390862 ACGGTACCATCATACTCTACTTTAATGTCTTCTAACATTTTAACTAATTTTCTTTGGATA 390921 || ||||||||||| | || | ||||| || | ||| || | | | |||||| Sbjct 58434 ACAGTACCATCATATTTAACCATGATGTCCTCCATAGCTTTCACAAGCCTCCGCTGGATA 58493 Query 390922 TAACCAGTGTCTGCAGTTTTAATTGCAGTATTAATAATACCTTCTCTTCCTGCCATAACT 390981 || ||||| |||| || || | ||||||| ||| | |||||| || || ||||| | Sbjct 58494 TACCCAGTCTCTGATGTCTTCACAGCAGTATCAATTAGACCTTCCCTACCACCCATAGCA 58553 Query 390982 TGGAAGAAAAATTCC 390996 ||||||||||| ||| Sbjct 58554 TGGAAGAAAAACTCC 58568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029262947181250