Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oropetium_20thomaeum_20[genbank_20GCA_5F001182835.1_202015-07-20] 625 sequences; 243,174,629 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq5 114 1e-20 seq24 100 2e-16 seq49 89.7 4e-13 seq17 87.8 1e-12 seq165 86.0 5e-12 seq8 86.0 5e-12 seq4 86.0 5e-12 >seq5 Length=5556497 Score = 114 bits (126), Expect = 1e-20 Identities = 165/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 48535 CGTCGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAAT 48594 || ||||||| | || || | |||| || ||||| ||| || || || ||||||| Sbjct 4050166 CGCCGCCGCCGCGGAGGCGGAGGACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAAT 4050107 Query 48595 CAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCG 48654 | | || | || |||| |||| |||||| ||||| || || || ||||| || |||| Sbjct 4050106 CGGCCAGCGTGCGCCCGTCCTCCAGCTGCTTCCCGGCGAAGATGAGCCGCTGCTGGTCCG 4050047 Query 48655 TGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCT 48714 || |||||||||||||| | ||| || || |||| | || |||| || Sbjct 4050046 GCGGGACGCCCTCCTTGTCCTGCACCTTGGCCTTCACGTTCGCCACCGTGTCCGACGGCT 4049987 Query 48715 CCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 ||||||||| ||| ||||| || ||||||| || || || || ||||||||| Sbjct 4049986 CCACCTCCAGCGTGATCGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCATC 4049934 >seq24 Length=2721981 Score = 100 bits (110), Expect = 2e-16 Identities = 162/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 48538 CGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG 48597 |||| || | || || | ||||| || |||||| || || || |||||||| |||| Sbjct 300583 CGCCTCCGCGGAGACGGAGCACCAGGTGAAGCGTGGATTCCTTCTGGATATTGTAGTCAG 300524 Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657 || | || | || || | |||||| ||||| || || || ||||| || |||| | Sbjct 300523 CGAGGGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATGAGGCGCTGCTGGTCCGGTG 300464 Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCA 48717 | | |||||||||||| ||||| ||||| | | | || || | ||||| Sbjct 300463 GGATGCCCTCCTTGTCCTGGATCTTAGCCTTTACGTTGTCGATGGTGTCCGAGGACTCCA 300404 Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 |||||| ||| || || || |||||||| || || || || ||||||||| || Sbjct 300403 CCTCCAACGTGATGGTCTTCCCCGTCAAGGTCTTCACGAAGATCTGCATCTTG 300351 >seq49 Length=1823295 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| |||| || |||| || || ||| ||| || || || ||||| |||| Sbjct 157440 CCACCCCTCAGCCTCAGGACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCG 157499 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | || |||| || | |||||| || ||||| || || ||||| || |||| ||| Sbjct 157500 AGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCCGGGGGG 157559 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | |||||||||||| ||||| || || | | | || || | ||| ||| Sbjct 157560 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCGGAGGACTCAACC 157619 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| ||||| || || || || | || || ||||| |||||||| Sbjct 157620 TCCAGGGTAATAGTCTTCCCAGTGAGGGTCTTGACAAAGATCTGCAT 157666 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| |||| | ||||| || || ||| ||| || || || ||||| |||| Sbjct 157895 CCACCCCTGAGCCTGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCG 157954 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | || |||| || | |||||| ||||| || || || ||||| || |||| ||| Sbjct 157955 AGGGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGG 158014 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | |||||||||||| |||||| || ||| | | | || || | ||||||| Sbjct 158015 ATGCCCTCCTTGTCCTGAATCTTGGCCTTCACATTGTCGATGGTGTCCGAGGACTCCACC 158074 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || || || || || || | || || || || |||||||| Sbjct 158075 TCAAGAGTGATGGTCTTGCCAGTAAGGGTCTTGACGAAGATCTGCAT 158121 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||| || || ||| || || ||||| ||||| || | || | || Sbjct 156993 AGACGAAGCACCAGGTGAAGAGTGGATTCCTTCTGAATGTTGTAGTCCGCCAGGGTACGT 157052 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| |||||| || ||||| ||||| ||||| || |||| || | ||||||| Sbjct 157053 CCATCCTCCAGCTGCTTGCCTGCAAAAATCAGACGCTGCTGGTCCGGTGGGATGCCCTCC 157112 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | | ||||| | ||| ||||||| || Sbjct 157113 TTGTCCTGGATCTTCGCCTTCACATTGTCAATGGTGTCTGAAGACTCTACCTCCAAGGTG 157172 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || || | || || ||||| |||||||| Sbjct 157173 ATAGTCTTCCCAGTGAGGGTCTTGACAAAGATCTGCAT 157210 >seq17 Length=3182705 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| ||| | || || || ||| || || || ||||| || | ||| | || Sbjct 3005496 AGGCGCAGCACTAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCAAGAGTGCGG 3005555 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| |||||| || || || || || | ||| || |||| ||| | ||||||| Sbjct 3005556 CCATCCTCCAGCTGCTTGCCAGCGAAGATGAGCCTCTGCTGGTCCGGGGGGATGCCCTCC 3005615 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| ||| || | | | | || || ||| ||||||| || Sbjct 3005616 TTGTCCTGGATCTTTGCTTTCACGTTATCAATGGTGTCGGAGCTCTCAACCTCCAGGGTG 3005675 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || ||||| ||||| || || ||||| |||||||| Sbjct 3005676 ATGGTCTTTCCAGTCAAGGTCTTCACAAAGATCTGCAT 3005713 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| || || || |||| ||||| || || ||| ||| || || || ||||| |||| Sbjct 3006626 GCCTCCTCTCAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGC 3006685 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | || |||| || | |||||| || || || || || | ||| || |||| ||| Sbjct 3006686 GAGGGTACGCCCGTCCTCGAGCTGCTTGCCAGCGAAGATAAGCCTCTGCTGGTCCGGGGG 3006745 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | |||||||||||| ||||| || || | | | || || | |||||| Sbjct 3006746 GATGCCCTCCTTGTCCTGGATCTTAGCCTTGACGTTGTCGATGGTGTCCGAGGACTCCAC 3006805 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 ||| | |||||| || || || || | || || || || ||||||||| Sbjct 3006806 CTCGAGCGTAATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATC 3006854 >seq165 Length=58862 Score = 86.0 bits (94), Expect = 5e-12 Identities = 152/222 (68%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||| ||| || ||| ||| || || || ||||| || | || | || Sbjct 23335 AGGCGGAGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGG 23394 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | |||||| ||||| || || || ||||| || |||| || | ||||||| Sbjct 23395 CCATCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCC 23454 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || || | | | || || | ||||||||||| ||| Sbjct 23455 TTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCACCTCCAGCGTG 23514 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 || || || ||||||| || || || || ||||||||| || Sbjct 23515 ATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATCTTG 23556 >seq8 Length=4429347 Score = 86.0 bits (94), Expect = 5e-12 Identities = 160/235 (68%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 48535 CGTCGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAAT 48594 || ||||||| | || || | ||||| || ||||| ||| || || | ||||| | Sbjct 2522495 CGCCGCCGCCGCGGAGGCGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGACGTTGTAGT 2522436 Query 48595 CAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCG 48654 | | || | || ||||| |||| |||||| |||||||| ||||| ||||| || |||| Sbjct 2522435 CGGCCAGCGTGCGCTCGTCCTCCAGCTGCTTCCCGGCAAAGATCAGGCGCTGCTGCTCCG 2522376 Query 48655 TGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCT 48714 || | | |||||||| |||||| || ||| | || | || | || Sbjct 2522375 GCGGGATACTTTCCTTGTCCTGGATCTTTGCCTTGACATTGGCGACGGTATCGCCGGTCT 2522316 Query 48715 CCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGT 48769 | ||||| | ||| | ||| ||||| ||| || || || || ||||||||||| Sbjct 2522315 CGACCTCGAGCGTCACCGTCTTTCCGATCAGCGTCTTCACGAAGATCTGCATCGT 2522261 >seq4 Length=5694366 Score = 86.0 bits (94), Expect = 5e-12 Identities = 152/222 (68%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||| ||| || ||| ||| || || || ||||| || | || | || Sbjct 3329482 AGGCGGAGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGG 3329423 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | |||||| ||||| || || || ||||| || |||| || | ||||||| Sbjct 3329422 CCATCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCC 3329363 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || || | | | || || | ||||||||||| ||| Sbjct 3329362 TTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCACCTCCAGCGTG 3329303 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 || || || ||||||| || || || || ||||||||| || Sbjct 3329302 ATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATCTTG 3329261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380934698326875